Commit 084797bb authored by van den Berg's avatar van den Berg
Browse files

Merge branch 'devel' into speedup

parents ecc12cc2 e76c3b7b
......@@ -10,7 +10,7 @@ variables:
before_script:
- export BASETEMP=$RUN_BASE_DIR/$CI_COMMIT_REF_NAME/$CI_JOB_ID
- source ${CONDA_SH}
- conda activate hutspot-pipeline
- conda activate hutspot-pipeline || conda create -n hutspot-pipeline --file requirements.txt --file requirements-dev.txt -y && conda activate hutspot-pipeline
- export PATH=${PATH}:${SINGULARITY_PATH}
- echo "#!/usr/bin/env bash" > snakemake
- echo "$(which snakemake) --profile slurm-test \"\$@\"" >> snakemake
......
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