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  • van den Berg's avatar
    Rename bedfile to targetsfile · d82c4932
    van den Berg authored
    Hutspot now supports two bed files to calculate coverage. One is the
    `targetsfile`, which was called `bedfile` before, and holds the targets
    of the capture kit. The other one is `baitsfile`, which holds the bait
    locations of the capture kit.
    
    It is possible to specify only the `targetsfile`, but if you specify the
    `baitsfile`, the `targetsfile` must be specified as well, since both are
    required by picard HsMetrics.
    
    Also added a test for invalid configuration files, and shortened the
    jsonschema validation error to only show the human readable message.
    d82c4932