.gitlab-ci.yml

.docker_before_script_anchor: &docker_before_script_anchor
  before_script:
    - pip install -r requirements.txt
    - pip install -r requirements-dev.txt

stages:
  - sanity
  - dry-run
  - integration

test_sanities:
  <<: *docker_before_script_anchor
  script:
    - py.test --tag sanity
  image: python:3.6-stretch
  tags:
    - docker
  stage: sanity

test_dry_run:
  <<: *docker_before_script_anchor
  script:
    - py.test --tag dry-run
  image: python:3.6-stretch
  tags:
    - docker
  stage: dry-run

test_integration:
  before_script:
    - export BASETEMP=$(mktemp -p ${RUN_BASE_DIR} -d)
  script:
    - source ${CONDA_SH}
    - conda activate hutspot-pipeline
    - export PATH=${PATH}:${CONDA_EXTRA_PATH}
    - py.test --tag integration --basetemp ${BASETEMP}
  tags:
    - slurm
  stage: integration