• Hoogenboom, Jerry's avatar
    FDSTools v1.0.0 Release Candidate 1 · de3593a8
    Hoogenboom, Jerry authored
    * General changes in v1.0.0rc1:
      * Fixed bug that caused variant descriptions in allele names of
        non-STR markers to be prepended with plus signs similar to suffix variants
        in STR markers.  When attempting to convert these allele names back to raw
        sequences, FDSTools would crash with an 'Invalid allele name' error.
    * Allelevis v2.0.1 (additionally):
      * In the tooltip in HTML visualisations, a line break may now only be
        inserted in allele names after an underscore character (_) or after a
        repeat block in STR allele names.  If the input file contains raw
        sequences, line breaks may now be introduced anywhere in the sequence.
    * Samplevis v2.1.1:
      * Added tooltip support to HTML visualisations.  Moving the mouse pointer
        over one of the alleles in the graph now displays a tooltip giving
        per-strand read counts of that allele.  The tooltip may include a
        'new allele' note if the input sample was analysed with FindNewAlleles.
      * The allele tables in HTML visualisations will now grow much wider than
        before if the screen (or window) is very narrow.
      * In the tables in HTML visualisations, a line break may now only be inserted
        in allele names after an underscore character (_) or after a repeat block
        in STR allele names.  If the input file contains raw sequences, line breaks
        may now be introduced anywhere in the sequence.
      * Improved determination of column widths of the allele tables when printing
        an HTML visualisation.
      * When printing an HTML visualisation, the graph and the corresponding table
        of a marker will be kept on the same page in all browsers now.
      * Fixed glitch that caused 'Infinity%' or 'NaN%' to be written in some cells
        in the allele tables in HTML visualisations for sequences that had zero
        reads (before or after correction).  These cells will remain empty now.
    * Pipeline v1.0.1 (additionally):
      * The Pipeline tool will now only write the command lines of the tools it
        runs if the -d/--debug option was specified.
    * Library v1.0.1 (additionally):
      * Added proper examples for non-STR markers and aliases.
    * Stuttermodel v1.1.1:
      * Minor change to internal variant representation.
    de3593a8
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