Commit fd596525 authored by Hoogenboom, Jerry's avatar Hoogenboom, Jerry

Release FDSTools v1.1.1 (TSSV 1.1.1)

Fixing a bug (introduced in v1.1.0) in the TSSV report output file.
parent b80e9427
......@@ -29,6 +29,9 @@ Alternatively, FDSTools can be installed by running:
FDSTools Changelog
------------------
v1.1.1
- Includes TSSV v1.1.1
v1.1.0
- Allele name heuristics: don't produce insertions at the end of the prefix
or at the beginning of the suffix; just include extra STR blocks.
......@@ -473,6 +476,11 @@ v1.0.0
TSSV
~~~~
v1.1.1
- Fixed incorrect calculation of tLeft, fLeft, rLeft, tRight and fRight
columns in the report output file when -T/--num-threads was set to 2 or
higher. The primary output of was unaffected.
v1.1.0
- Added option '-T/--num-threads' (default: 1), which controls the number
of worker threads TSSV may spawn to run the analysis in parallel.
......
......@@ -24,7 +24,7 @@ including tools for characterisation and filtering of PCR stutter artefacts and
other systemic noise, and for automatic detection of the alleles in a sample.
"""
__version_info__ = ('1', '1', '0')
__version_info__ = ('1', '1', '1')
__version__ = '.'.join(__version_info__)
usage = __doc__.split("\n\n\n")
......
......@@ -47,7 +47,7 @@ from ..lib import pos_int_arg, add_input_output_args, get_input_output_files,\
add_sequence_format_args, reverse_complement, PAT_SEQ_RAW,\
get_column_ids, ensure_sequence_format
__version__ = "1.1.0"
__version__ = "1.1.1"
# Default values for parameters are specified below.
......@@ -231,10 +231,10 @@ def process_file_parallel(infile, tssv_library, indel_score, workers):
for marker, matches, seq1, seq2 in results:
recognised |= matches
counters[marker]["fLeft"] += matches
counters[marker]["fRight"] += (matches >> 1)
counters[marker]["rLeft"] += (matches >> 2)
counters[marker]["rRight"] += (matches >> 3)
counters[marker]["fLeft"] += matches & 1
counters[marker]["fRight"] += matches >> 1 & 1
counters[marker]["rLeft"] += matches >> 2 & 1
counters[marker]["rRight"] += matches >> 3 & 1
# Search in the forward strand.
if seq1 is not None:
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment