Commit 53fbe9ec authored by Hoogenboom, Jerry's avatar Hoogenboom, Jerry

Fix allelefinder allowing 'Other sequences' as allele

parent da8d1d1b
......@@ -81,7 +81,7 @@ def find_alleles_sample(data, outfile, reportfile, tag, min_reads,
top_allele[marker] = 0
top_noise[marker] = ["-", 0]
if sequence == "Other Sequences" and reads >= top_noise[marker][1]:
if sequence == "Other sequences" and reads >= top_noise[marker][1]:
# Aggregated sequences are new highest noise!
top_noise[marker] = [sequence, reads]
elif reads > top_allele[marker]:
......
......@@ -190,6 +190,15 @@ name tssv OK
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Tool and visualisation version numbering, e.g., v1.2.3:
1 major version, changes only with large, disruptive, fundamental changes
2 minor version, changes when the default output is altered, or when it is
otherwise likely that user pipelines will break when updating
3 patch version, changes with any other changes (bug fixes, new optional
features, etc.)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Find TODOs and FIXMEs in the code:
grep "TODO\|FIXME" *.py */*.py */*/*.py
......
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