FDSTools v1.0.0 Release Candidate 1
* General changes in v1.0.0rc1: * Fixed bug that caused variant descriptions in allele names of non-STR markers to be prepended with plus signs similar to suffix variants in STR markers. When attempting to convert these allele names back to raw sequences, FDSTools would crash with an 'Invalid allele name' error. * Allelevis v2.0.1 (additionally): * In the tooltip in HTML visualisations, a line break may now only be inserted in allele names after an underscore character (_) or after a repeat block in STR allele names. If the input file contains raw sequences, line breaks may now be introduced anywhere in the sequence. * Samplevis v2.1.1: * Added tooltip support to HTML visualisations. Moving the mouse pointer over one of the alleles in the graph now displays a tooltip giving per-strand read counts of that allele. The tooltip may include a 'new allele' note if the input sample was analysed with FindNewAlleles. * The allele tables in HTML visualisations will now grow much wider than before if the screen (or window) is very narrow. * In the tables in HTML visualisations, a line break may now only be inserted in allele names after an underscore character (_) or after a repeat block in STR allele names. If the input file contains raw sequences, line breaks may now be introduced anywhere in the sequence. * Improved determination of column widths of the allele tables when printing an HTML visualisation. * When printing an HTML visualisation, the graph and the corresponding table of a marker will be kept on the same page in all browsers now. * Fixed glitch that caused 'Infinity%' or 'NaN%' to be written in some cells in the allele tables in HTML visualisations for sequences that had zero reads (before or after correction). These cells will remain empty now. * Pipeline v1.0.1 (additionally): * The Pipeline tool will now only write the command lines of the tools it runs if the -d/--debug option was specified. * Library v1.0.1 (additionally): * Added proper examples for non-STR markers and aliases. * Stuttermodel v1.1.1: * Minor change to internal variant representation.
Showing with 464 additions and 94 deletions