Fix allelefinder allowing 'Other sequences' as allele

fdstools/tools/allelefinder.py

@@ -81,7 +81,7 @@ def find_alleles_sample(data, outfile, reportfile, tag, min_reads,
             top_allele[marker] = 0
             top_noise[marker] = ["-", 0]
 
-        if sequence == "Other Sequences" and reads >= top_noise[marker][1]:
+        if sequence == "Other sequences" and reads >= top_noise[marker][1]:
             # Aggregated sequences are new highest noise!
             top_noise[marker] = [sequence, reads]
         elif reads > top_allele[marker]:

notes.txt

@@ -190,6 +190,15 @@ name    tssv    OK
 
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
+Tool and visualisation version numbering, e.g., v1.2.3:
+1   major version, changes only with large, disruptive, fundamental changes
+2   minor version, changes when the default output is altered, or when it is
+    otherwise likely that user pipelines will break when updating
+3   patch version, changes with any other changes (bug fixes, new optional
+    features, etc.)
+
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
 Find TODOs and FIXMEs in the code:
 grep "TODO\|FIXME" *.py */*.py */*/*.py