Implemented support for non-STR markers, improved file handling and more
Additions and improvements to the FDSTools library file format: * New [genome_position] section in FDSTools-style library files allows for specifying the chromosome and position of each marker. * New [no_repeat] section in FDSTools-style library files allows for including non-STR markers. * Comma/semicolon/space-separated values in FDSTools-style library files can now also be separated by tab characters and multiple consecutive separators are no longer collapsed (with the exception of whitespace). * If no prefix and/or suffix has been specified for an alias, the prefix/suffix of the marker itself is used. * Implemented support for non-STR markers (e.g. SNP clusters) and mtDNA markers. Allele names of the latter follow mtDNA nomenclature. * Improved the logic of generating STR allele names for sequences that have a prefix or suffix sequence that was not included in the library file. * Updated and clarified various explanatory texts in generated FDSTools library files. Fixed: * Fixed a bug that caused prefix/suffix variants in aliases to go missing in allele names. Improved file handling: * Library files are now closed immediately after parsing them. * Sample data input files are opened one at a time now. Visualisations: * Updated Vega to version 2.3.1. * Worked around a bug in Google Chrome that caused the 'Save image' link to stop working after having been used once.
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