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jhoogenboom authored
* Introducing a new, extended library file format to support allele name generation. The new libconvert tool can convert TSSV libraries to the new format and vice versa. * Added functions for converting between raw sequences, TSSV-style sequences, and allele names. * Added global -d/--debug option. Stuttermark updates: * Stuttermark now automatically converts input sequences to TSSV-style if a library is provided. * Stuttermark will no longer crash if there is no 'name' column. Instead, all sequences are taken to belong to the same marker. New tools: * libconvert converts between FDSTools and TSSV library formats. * seqconvert converts between raw sequences, TSSV-style sequences, and allele names. * allelefinder detects the true alleles in reference samples.
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