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jhoogenboom authored
* New visualisation Profilevis added to the package, but not yet to the Vis tool. * The Vis tool now prints a helpful error message if no output file was specified, instead of printing half a megabyte of HTML and minified JavaScript to the terminal. * Fixed crash that occurred when attempting to convert the sequence of an alias to its allele name. * Fixed various bugs in the functions that convert sequences to TSSV-style and allele names. Only the conversion of non-matching sequences was affected. * Added "max_expected_copies" section to the FDSTools library format. The default value is 2. Allelefinder will now use these as the maximum number of alleles per marker if the -a/--max-alleles option is not specified. * The section headers in the FDSTools library format are now case insensitive.
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