• jhoogenboom's avatar
    Greatly increased argument help · b30bdbbc
    jhoogenboom authored
    * All tools now have a longer description in the tool-specific help
    * Arguments are now presented in groups and the order is the same
      across tools.
    * Fixed bug that rendered BGHomStats and BGEstimate with the -H
      option useless.
    * The report of Allelefinder and BGEstimate is now written to
      sys.stderr by default. This means the report is now always
      generated (but it may be sent directly to /dev/null explicitly by
      the user). The big plus is that the progress of the tools is
      visible in the terminal when the tools are run by hand.