-
jhoogenboom authored
* New tool BGHomStats computes statistics (minimum, maximum, mean, and sample variance) of noise ratios in homozygous samples. * The default BGEstimate output format has been changed to be compatible with that of BGHomStats. The cross-tabular output format is still available as an option because it easily uses 90% less disk space. BGCorrect (and other future tools that use noise profiles) will work with both formats. * Fixed bug in the --min-samples option of BGEstimate that could cause some alleles with less than the specified number of samples to be included if --drop-samples is used at the same time. * The user now receives an error message if there are unknown arguments. The error message lists the usage string of the requested tool. (Argparse's default was to print the general FDSTools usage string, which is not helpful.)
a09131d9