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jhoogenboom authored
* New tool StutterModel fits polynomials to stutter ratio vs repeat length. * Changed -R to -Q (--limit-reads) so that I can reassign -R to an option that is used more often. * Changed -r to -R (--report) to make sure it will not collide with the -r option in Stuttermark, if I ever want to add report output to Stuttermark. * BGHomStats now checks whether all alleles are detected
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