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jhoogenboom authored
* New tool BGPredict predicts background noise profiles (containing only stutter products) for user-supplied alleles/sequences using a trained stutter model obtained from Stuttermodel. Currently only the amounts of the forward strand are predicted. * New option -L/--min-lengths for Stuttermodel allows to set a minimum required number of unique repeat lengths to base the fits on (default: 5). * Updated formatting of output of Stuttermodel: added '+' sign to positive stutter, limited r2 scores to 3 decimal places, and now all coefficients are written in scientific notation with 3 decimal places. * The --output-column option of SeqConvert now defaults to using the value of --allele-column.
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