Delete bowtie2_build_index_tomato_lisa_180718.sh

scripts/bowtie2_build_index_tomato_lisa_180718.sh

-#PBS -S /bin/bash
-#PBS -lnodes=1:ppn=16
-#PBS -lwalltime=0:45:00
-	# if the script does not finish in 8hrs, give more hours for calculations
-	# (up to 120:00:00 for 5 days)
-
-#bowtie2 version 2.2.4
-
-module load bowtie/2.2.4
-
-#copy to scratch
-cp "${HOME}"/genomes/S_lycopersicum_chromosomes.3.00.fa "${TMPDIR}"/
-
-#build index from the reference genome
-bowtie2-build S_lycopersicum_chromosomes.3.00.fa tomato_inx_3.00
-# bowtie-build [reference fasta] [base name for index file]
-
-mv "${TMPDIR}"/* "${HOME}"/genomes/