Pipeline not working on dev branch
Created by: JihedC
Hi Jianhui,
I was trying to run the pipeline on shark but I have got this error message: ''' Start time : Wed Mar 17 14:35:21 CET 2021 /exports/humgen/jihed/miniconda3/lib/python3.6/site-packages/snakemake/workflow.py:26: FutureWarning: read_table is deprecated, use read_csv instead, passing sep='\t'. from snakemake.parser import parse Building DAG of jobs... Creating conda environment envs/homer.yaml... Downloading remote packages. CreateCondaEnvironmentException: Could not create conda environment from /exports/humgen/jihed/Jianhui/Snakemake_ATAC_2020/ATAC-seq_pipeline/rules/../envs/homer.yaml: Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed
ResolvePackageNotFound:
- hmmratac=4.11
End time : Wed Mar 17 14:35:39 CET 2021 '''
I think there is a mistake with the version of hmmratac. On conda I can find only hmmratac 1.2.10.
Can you fix this please?