Commits · main · Chouaref / Snakemake_ATAC_2020

28 Dec, 2020 4 commits
- corrected typo · 84828a8d
  JihedC authored Dec 28, 2020
  
  84828a8d
- corrected environment location · 8c93529a
  JihedC authored Dec 28, 2020
  
  8c93529a
- change constraint wildcards · 72df9aa1
  JihedC authored Dec 28, 2020
  
  72df9aa1
- attempt to fix the download of gene gtf · 6be879ed
  JihedC authored Dec 28, 2020
  
  6be879ed
23 Dec, 2020 9 commits
- added rule heatmap · 63c28e21
  JihedC authored Dec 23, 2020
  
  63c28e21
- Include working HMMRATAC and cleaned rules · 77741dda
  JihedC authored Dec 23, 2020
  
  77741dda
- clean the Snakefile by including rules in rules folder · 351a5144
  JihedC authored Dec 23, 2020
  
  351a5144
- Merge branch 'main' of https://github.com/JihedC/Snakemake_ATAC_2020 into main · 8ca11f4f
  JihedC authored Dec 23, 2020
  
  8ca11f4f
- removed hidden files · b64486f6
  JihedC authored Dec 23, 2020
  
  b64486f6
- Delete .DS_Store · 3ca410da
  Jihed Chouaref authored Dec 23, 2020
  
  3ca410da
- removed unnecessary files · b9218a01
  JihedC authored Dec 23, 2020
  
  b9218a01
- Update and rename snakefile to Snakefile · bab1a3b4
  Jihed Chouaref authored Dec 23, 2020
  
  bab1a3b4
- corrected some rules and improved readability of the Snakefile · d3011c41
  JihedC authored Dec 23, 2020
  
  d3011c41
14 Dec, 2020 2 commits
- deeptools.yaml completed · 817cbc15
  WJH58 authored Dec 14, 2020
  
  817cbc15
- successful dry run with deeptools added. · d9acda2d
  WJH58 authored Dec 14, 2020
  
  d9acda2d
08 Dec, 2020 7 commits
- remove unnecessary files · dc1d63f7
  WJH58 authored Dec 08, 2020
  
  dc1d63f7
- update data · 8812d46d
  WJH58 authored Dec 08, 2020
  
  8812d46d
- update gitignore · 813769e3
  WJH58 authored Dec 08, 2020
  
  813769e3
- add macs2 configfile · 507d27f8
  WJH58 authored Dec 08, 2020
  
  507d27f8
- change macs3 to macs2 · 5fdddbc3
  WJH58 authored Dec 08, 2020
  
  5fdddbc3
- snakefile upload · b337f46f
  WJH58 authored Dec 08, 2020
  
  b337f46f
- Snakefile and units.tsv changed · 8abf2552
  WJH58 authored Dec 08, 2020
  
  8abf2552
07 Dec, 2020 1 commit
- Update units.tsv · 1c1bf7f0
  WJH58 authored Dec 07, 2020
  
  1c1bf7f0
01 Dec, 2020 1 commit
- units.tsv and snakefile adapter for real data · 54d94a31
  WJH58 authored Dec 01, 2020
  
  54d94a31
27 Nov, 2020 1 commit
- added params under rule peak_calling · 8269c82d
  WJH58 authored Nov 27, 2020
  
  8269c82d
23 Nov, 2020 3 commits
- Successuful running on mac · c0085bb1
  WJH58 authored Nov 23, 2020
  
  c0085bb1
- trimmed_fastqc debugged · c5de0d34
  WJH58 authored Nov 23, 2020
  
  c5de0d34
- trimmed_fastqc debug · 2e90808e
  WJH58 authored Nov 23, 2020
  
  2e90808e
20 Nov, 2020 2 commits
- unmute units and BED · f411b85c
  WJH58 authored Nov 20, 2020
  
  f411b85c
- conda file corrected · 07eacb09
  WJH58 authored Nov 20, 2020
  
  07eacb09
19 Nov, 2020 1 commit
- mapping rule argument annotation · ef84f592
  WJH58 authored Nov 19, 2020
  
  ef84f592
17 Nov, 2020 5 commits
- put comments on trimmomatic · a35f703d
  WJH58 authored Nov 17, 2020
  
  a35f703d
- solved an error in rule trimmomatic · c6afcd22
  WJH58 authored Nov 17, 2020
  
  c6afcd22
- bowtiw2 version changed again · fcde192a
  WJH58 authored Nov 17, 2020
  
  fcde192a
- bowtie2 version changed · 954d4052
  WJH58 authored Nov 17, 2020
  
  954d4052
- Working pipeline until trimmomatic · 60251e93
  WJH58 authored Nov 17, 2020
  
  60251e93
16 Nov, 2020 1 commit
- trimmomatic added · 71eab569
  WJH58 authored Nov 16, 2020
  
  71eab569
13 Nov, 2020 3 commits
- add scripts necessary for shark · c7001b9f
  WJH58 authored Nov 13, 2020
  
  c7001b9f
- working pipeline for fastqc and index_genome · 3f384cd7
  WJH58 authored Nov 13, 2020
  
  3f384cd7
- Initial commit · 4eb7c33d
  Jihed Chouaref authored Nov 13, 2020
  
  4eb7c33d