Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Chouaref
Snakemake_ATAC_2020
Commits
f411b85c
Commit
f411b85c
authored
Nov 20, 2020
by
WJH58
Browse files
unmute units and BED
parent
07eacb09
Changes
1
Hide whitespace changes
Inline
Side-by-side
ATAC-seq_pipeline/snakefile
View file @
f411b85c
...
...
@@ -17,9 +17,9 @@ RESULT_DIR = config["results_dir"]
DATA_DIR = config["data_dir"]
GENOME_FASTA_URL = config["genome_fasta_url"]
#
units = pd.read_table(config["units"], dtype=str).set_index(["bed"], drop=False)
units = pd.read_table(config["units"], dtype=str).set_index(["bed"], drop=False)
#
BED = units.index.get_level_values('bed').unique().tolist()
BED = units.index.get_level_values('bed').unique().tolist()
units = pd.read_table(config["units"], dtype=str).set_index(["sample"], drop=False)
SAMPLES = units.index.get_level_values('sample').unique().tolist()
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment