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Chouaref
Snakemake_ATAC_2020
Commits
d3011c41
Commit
d3011c41
authored
Dec 23, 2020
by
JihedC
Browse files
corrected some rules and improved readability of the Snakefile
parent
817cbc15
Changes
1
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ATAC-seq_pipeline/config.yaml
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d3011c41
...
...
@@ -47,6 +47,8 @@ macs2:
outdir
:
"
results/macs2"
# bamCoverage
# binSize parameters is set to 1000bp to test quickly the pipeline. Change to a lower value with real samples.
bamCoverage
:
effectiveGenomeSize
:
"
2652783500"
normalization
:
"
RPKM"
binSize
:
"
1000"
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