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Chouaref
Snakemake_ATAC_2020
Commits
8c93529a
Commit
8c93529a
authored
Dec 28, 2020
by
JihedC
Browse files
corrected environment location
parent
72df9aa1
Changes
1
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ATAC-seq_pipeline/rules/deeptools.smk
View file @
8c93529a
...
@@ -69,7 +69,7 @@ rule ComputeMatrix:
...
@@ -69,7 +69,7 @@ rule ComputeMatrix:
log:
log:
RESULT_DIR + "logs/computematrix/matrix.log"
RESULT_DIR + "logs/computematrix/matrix.log"
conda:
conda:
"envs/deeptools.yaml"
"
../
envs/deeptools.yaml"
params:
params:
GTF = WORKING_DIR + "gtf_gene.gtf"
GTF = WORKING_DIR + "gtf_gene.gtf"
shell:
shell:
...
@@ -81,6 +81,6 @@ rule plotHeatmap:
...
@@ -81,6 +81,6 @@ rule plotHeatmap:
output:
output:
RESULT_DIR + "heatmap/heatmap_reference_point_genes.pdf"
RESULT_DIR + "heatmap/heatmap_reference_point_genes.pdf"
conda:
conda:
"envs/deeptools.yaml"
"
../
envs/deeptools.yaml"
shell:
shell:
"plotHeatmap -m {input} -o {output}"
"plotHeatmap -m {input} -o {output}"
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