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Chouaref
Snakemake_ATAC_2020
Commits
2e90808e
Commit
2e90808e
authored
Nov 23, 2020
by
WJH58
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trimmed_fastqc debug
parent
f411b85c
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.DS_Store
ATAC-seq_pipeline/temp/*
ATAC-seq_pipeline/.snakemake/*
ATAC-seq_pipeline/results/logs/*
ATAC-seq_pipeline/results/fastqc/*
ATAC-seq_pipeline/.DS_Store
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ATAC-seq_pipeline/labjournal/19-11-2020.md
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ATAC-seq_pipeline/snakefile
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@@ -17,9 +17,9 @@ RESULT_DIR = config["results_dir"]
DATA_DIR = config["data_dir"]
GENOME_FASTA_URL = config["genome_fasta_url"]
units = pd.read_table(config["units"], dtype=str).set_index(["bed"], drop=False)
#
units = pd.read_table(config["units"], dtype=str).set_index(["bed"], drop=False)
BED = units.index.get_level_values('bed').unique().tolist()
#
BED = units.index.get_level_values('bed').unique().tolist()
units = pd.read_table(config["units"], dtype=str).set_index(["sample"], drop=False)
SAMPLES = units.index.get_level_values('sample').unique().tolist()
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