Commit 2e90808e authored by WJH58's avatar WJH58
Browse files

trimmed_fastqc debug

parent f411b85c
.DS_Store
ATAC-seq_pipeline/temp/*
ATAC-seq_pipeline/.snakemake/*
ATAC-seq_pipeline/results/logs/*
ATAC-seq_pipeline/results/fastqc/*
......@@ -17,9 +17,9 @@ RESULT_DIR = config["results_dir"]
DATA_DIR = config["data_dir"]
GENOME_FASTA_URL = config["genome_fasta_url"]
units = pd.read_table(config["units"], dtype=str).set_index(["bed"], drop=False)
#units = pd.read_table(config["units"], dtype=str).set_index(["bed"], drop=False)
BED = units.index.get_level_values('bed').unique().tolist()
#BED = units.index.get_level_values('bed').unique().tolist()
units = pd.read_table(config["units"], dtype=str).set_index(["sample"], drop=False)
SAMPLES = units.index.get_level_values('sample').unique().tolist()
......
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