Commit 07eacb09 authored by WJH58's avatar WJH58
Browse files

conda file corrected

parent ef84f592
......@@ -124,6 +124,7 @@ rule trimmomatic:
SLIDINGWINDOW:4:15 \
MINLEN:40 &>{log}
"""
rule trimmed_fastqc:
input:
forward_reads = WORKING_DIR + "trimmed/{samples}_forward.fastq.gz",
......@@ -168,7 +169,7 @@ rule mapping:
unmapped = WORKING_DIR + "unmapped/{samples}.fq.gz"
threads: 10
conda:
"../envs/samtools_bowtie.yaml"
"envs/samtools_bowtie.yaml"
log:
RESULT_DIR + "logs/bowtie/{samples}.log"
shell:
......
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