Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Chouaref
Snakemake_ATAC_2020
Commits
07eacb09
Commit
07eacb09
authored
Nov 20, 2020
by
WJH58
Browse files
conda file corrected
parent
ef84f592
Changes
1
Hide whitespace changes
Inline
Side-by-side
ATAC-seq_pipeline/snakefile
View file @
07eacb09
...
...
@@ -124,6 +124,7 @@ rule trimmomatic:
SLIDINGWINDOW:4:15 \
MINLEN:40 &>{log}
"""
rule trimmed_fastqc:
input:
forward_reads = WORKING_DIR + "trimmed/{samples}_forward.fastq.gz",
...
...
@@ -168,7 +169,7 @@ rule mapping:
unmapped = WORKING_DIR + "unmapped/{samples}.fq.gz"
threads: 10
conda:
"
../
envs/samtools_bowtie.yaml"
"envs/samtools_bowtie.yaml"
log:
RESULT_DIR + "logs/bowtie/{samples}.log"
shell:
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment