Commit bbef9d35 authored by Laros's avatar Laros
Browse files

Added lecture.

parent f22cb4f4
../../submodules/presentation/Makefile
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\documentclass[slidestop]{beamer}
\author{Jeroen F.J. Laros}
\title{BBMRI2: Storage \& Compute}
\providecommand{\mySubTitle}{}
\providecommand{\myConference}{BBMRI2 taskleader meeting}
\providecommand{\myDate}{15-03-2016}
\providecommand{\myGroup}{}
\providecommand{\myDepartment}{Department of Human Genetics}
\providecommand{\myCenter}{Center for Human and Clinical Genetics}
\usetheme{lumc}
\begin{document}
% This disables the \pause command, handy in the editing phase.
%\renewcommand{\pause}{}
% Make the title slide.
\makeTitleSlide{\hspace{-2cm}\includegraphics[width=5.5cm]{logos/bbmri_logo}}
% Proposed structure:
%
% - Summary of deliverables until now, if possible with a small demo
% - Summary of next steps (next 3 months)
% - What links do you have with other tasks of WP's?
% - Are there any issues preventing you to deliver the next steps as planned
% First page of the presentation.
\section{Introduction}
\makeTableOfContents
\subsection{Goal}
\begin{pframe}
A clear definition of the BBMRI computational environment.
\bigskip
Example use cases:
\begin{itemize}
\item A researcher wants to use a BBMRI pipeline.
\begin{itemize}
\item With \emph{exactly} the same settings, reference files, etc.
\end{itemize}
\item An analysis needs to be redone.
\begin{itemize}
\item To obtain removed intermediate files for example.
\end{itemize}
\end{itemize}
\bigskip
Requirements:
\begin{itemize}
\item Virtual cluster.
\item Data access mechanisms.
\end{itemize}
\end{pframe}
\begin{pframe}
Projects:
\begin{itemize}
\item Pipeline infrastructure.
\begin{itemize}
\item One or more \emph{virtual machines} in cluster configuration.
\end{itemize}
\item Federated research network.
\begin{itemize}
\item Fast and secure access to BBMRI data.
\end{itemize}
\item Federated authentication and authorisation.
\begin{itemize}
\item No need to make accounts at other institutes.
\end{itemize}
\end{itemize}
\end{pframe}
\section{Deliverables 2016 Q1}
\subsection{Ongoing activities}
\begin{pframe}
Three deliverables for the first quarter:
\begin{itemize}
\item Inventory pipeline infrastructures.
\begin{itemize}
\item Dependencies, hardware requirements, etc.
\end{itemize}
\item Inventory of facilities and virtual machines.
\begin{itemize}
\item Capacity, security, users and roles, etc.
\end{itemize}
\item Inventory management systems.
\begin{itemize}
\item Puppet, Ansible, easybuild, etc.
\end{itemize}
\end{itemize}
\bigskip
All of these tasks are done in collaboration with the \emph{Pipelines}
taskforce.
\end{pframe}
\begin{pframe}
Other tasks that have been started:
\begin{itemize}
\item e-LAN.
\begin{itemize}
\item Dedicated secure network between UMCs.
\end{itemize}
\item Virtual cluster nodes in the cloud.
\begin{itemize}
\item Pilot to test performance.
\end{itemize}
\item Federated SSH access.
\begin{itemize}
\item Authenticate with SURFconext to upload a \emph{public key}.
\item SSH server uses this central database of keys for authentication.
\item Working test setup.
\end{itemize}
\end{itemize}
\end{pframe}
\section{Next steps}
\subsection{Deliverables 2016 Q2}
\begin{pframe}
On the agenda:
\begin{itemize}
\item Pilot pipeline deployment.
\begin{itemize}
\item Virtual machine in the cloud with working BBMRI pipeline.
\end{itemize}
\item First fully managed virtual machine.
\begin{itemize}
\item Automated installation (Ansible, Puppet, etc.).
\end{itemize}
\end{itemize}
\bigskip
Other tasks:
\begin{itemize}
\item Finish testing e-LAN.
\item Finish testing virtual cluster nodes.
\item Start virtual head node (completing virtual cluster).
\item Start federated SSH access on virtual cluster.
\end{itemize}
\end{pframe}
\section{Links to other tasks / WP's}
\subsection{Current collaborations}
\begin{pframe}
Started collaboration:
\begin{itemize}
\item WP5: Pipelines (Leon Mei).
\begin{itemize}
\item Inventory.
\item Pipeline deployment.
\end{itemize}
\end{itemize}
\bigskip
Investigating collaboration:
\begin{itemize}
\item WP5: Operations (Rita Azevedo).
\begin{itemize}
\item Possible connections to analysis portal.
\item Offering downloadable package of virtual BBMRI environment.
\end{itemize}
\end{itemize}
\end{pframe}
\section{Issues}
\subsection{Foreseeable difficulties}
\begin{pframe}
Currently no blockers.
\bigskip
We foresee problems with the implementation of federated authorisation.
\begin{itemize}
\item Identity management.
\item Group management.
\item Access control.
\end{itemize}
\end{pframe}
% Make the acknowledgements slide.
\makeAcknowledgementsSlide{
\begin{tabular}{lll}
Pieter Neerincx & Leon Mei & Morris Swertz\\
Freerk van Dijk & Peter van 't Hof & Jan-Willem Boiten\\
Hans Brouwers & Rita Azevedo & Jeroen Beli\"en\\
Irene Nooren & Paul van Dijk & Edith Adriaanse\\
Martijn Vermaat & Maarten Kooyman\\
Jonathan Vis\\
Guy Allard\\
Michel Villerius\\
\end{tabular}
\bigskip
\vspace{-1.2cm}\hfill\includegraphics[height=2cm]{logos/bbmri_logo}\\
}
\end{document}
../../submodules/presentation/beamerthemelumc.sty
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../../submodules/presentation/logos
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Subproject commit 8d5710c016ca54a224951e53ae779fe6f67e3629
Subproject commit 56e1d13f2ebb87b8abcfa2cc34a5ea258b382fc3
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