Commit 8e7ee14f authored by Laros's avatar Laros
Browse files

Made the coverage slides compilable.

parent c2af6d25
% Alter these four lines for a new presentation.
\providecommand{\me}{Jeroen F. J. Laros}
\providecommand{\myTitle}{Copy Number of Substrings}
\documentclass[slidestop]{beamer}
\title{Copy Number of Substrings}
\providecommand{\myConference}{Work discussion}
\providecommand{\myDate}{Tuesday, 13 October 2009}
% Now go to %%% BEGIN PRESENTATION %%%
\documentclass[a4, portrait]{seminar}
\usepackage{semcolor} % For coloured text.
\usepackage{slidesec} % For section headings.
\usepackage{newcent} % This is a better font for presentations.
\input{seminar.bug}
\usepackage{graphicx} % For pictures.
\usepackage{fancybox} % For the background picture.
\definecolor{Blue}{rgb}{0.,0.11372,0.37647} % Custom LUMC color
\renewcommand{\labelitemi}{\textcolor{white}{$\bullet$}} % Make the bullets for
\renewcommand{\labelitemii}{\textcolor{white}{--}} % itemising white.
\renewcommand{\labelitemiii}{\textcolor{white}{$\ast$}}
\renewcommand{\labelitemiv}{\textcolor{white}{$\circ$}}
\newslideframe{TITLE}{ % Template for the title.
\boxput{
\rput(0, 0){\includegraphics[angle=90, scale=.485]{bg}}
}{#1}
}
\newslideframe{PRES}{ % Template for the body.
\boxput{
\rput(0, 0){\includegraphics[angle=90, scale=.485]{bg2}}
}{
\textcolor{Blue}{
\rput[l]{90}(8.57, -1.5){\scriptsize{\myConference}}
\rput[c]{90}(8.57, 5.35){\scriptsize{\theslide/\pageref{LastPage}}}
\rput[r]{90}(8.57, 12.2){\scriptsize{\myDate}}
}
\white #1
\author{Jeroen F. J. Laros}
\providecommand{\myGroup}{}
\providecommand{\myDepartment}{Department of Human Genetics}
\providecommand{\myCenter}{Center for Human and Clinical Genetics}
\providecommand{\lastCenterLogo}{
\raisebox{-0.1cm}{
%\includegraphics[height = 1cm]{lgtc_logo}
%\includegraphics[height = 0.7cm]{ngi_logo}
}
}
\renewcommand{\makeslideheading}[1]{ % Put the slide headings on top.
\rput[l](0.2, .40){
\textbf{
\textcolor{Blue}{#1}
}
}
\newline
\providecommand{\lastRightLogo}{
%\includegraphics[height = 0.7cm]{nbic_logo}
%\includegraphics[height = 0.8cm]{nwo_logo_en}
\hspace{1.5cm}\includegraphics[height = 0.7cm]{gen2phen_logo}
}
\pagestyle{empty}
\usetheme{lumc}
\begin{document}
\slideframe{TITLE} % Use the title template.
\begin{slide}
\setcounter{slide}{0}
\vspace*{1.5cm}
\begin{center}
{\bf\Large{\myTitle}}\\
\vspace{2.5cm}
\textcolor{Blue}{
{\bf
\small{\me}\\
\small{Department of Human Genetics}\\
\small{Center for Human and Clinical Genetics}
}
}
\end{center}
\vfill
\end{slide}
\slideframe{PRES} % Use the body template.
% This disables the \pause command, handy in the editing phase.
%\renewcommand{\pause}{}
%%% BEGIN PRESENTATION %%%
% Make the title page.
\bodytemplate
\begin{slide}
\slideheading{Problem description}
% First page of the presentation.
\begin{frame}
\frametitle{Problem description}
A sequenced string is usually mapped back to a reference genome.
......@@ -94,10 +46,10 @@ is not unique increases when the length decreases.
\item Map everything randomly on one of the occurrences.
\end{itemize}
\vfill
\end{slide}
\end{frame}
\begin{slide}
\slideheading{Taking notice of the problem}
\begin{frame}
\frametitle{Taking notice of the problem}
By analysing the reference genome itself, we can predict how many times each
read occurs.
......@@ -111,7 +63,9 @@ count number.
\item
\item Verification in general.
\end{itemize}
\end{frame}
\begin{frame}
\begin{center}
\fbox{
\scalebox{0.7}{
......@@ -120,10 +74,10 @@ count number.
}
\end{center}
\vfill
\end{slide}
\end{frame}
\begin{slide}
\slideheading{Practical solution}
\begin{frame}
\frametitle{Practical solution}
Preliminary research [Rietveld 2009] showed that indexing the entire human
genome can be done efficiently (half an hour). With non-dedicated hardware
and low memory capabilities about eight hours.
......@@ -131,13 +85,12 @@ and low memory capabilities about eight hours.
Output consists of a truncated-suffix array (suffixes truncated at any length),
this array can be used to determine all occurrences of...
\vfill
\end{slide}
\end{frame}
\begin{slide}
\rput(11.4,0.6){\includegraphics[scale=0.1]{Gen2Phen}}
\slideheading{Questions?}
\lastpagetemplate
\begin{frame}
\frametitle{Questions?}
\vfill
\label{LastPage}
\end{slide}
\end{frame}
\end{document}
Subproject commit ef45a090b15f92d6aacd073fa8955e27230bd83a
Subproject commit 67af7908862139e1dc4c966e1dcd984d2db0592b
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