Commit 88297415 authored by Laros's avatar Laros
Browse files

Added lgtc_intro slides.

parent ef5ead71
../../submodules/presentation/Makefile
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../../submodules/presentation/beamerthemelumc.sty
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../../submodules/presentation-pics/pics/gapss3.dot
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../../submodules/presentation/gen2phen_logo.eps
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\documentclass[slidestop]{beamer}
\title{Bioinformatics at the LGTC}
\providecommand{\myConference}{MGC course}
\providecommand{\myDate}{Wednesday, 5 February 2013}
\author{Jeroen F. J. Laros}
\providecommand{\myGroup}{Leiden Genome Technology Center}
\providecommand{\myDepartment}{Department of Human Genetics}
\providecommand{\myCenter}{Center for Human and Clinical Genetics}
\providecommand{\lastCenterLogo}{
\raisebox{-0.1cm}{
\includegraphics[height = 1cm]{lgtc_logo}
%\includegraphics[height = 0.7cm]{ngi_logo}
}
}
\providecommand{\lastRightLogo}{
%\includegraphics[height = 0.7cm]{nbic_logo}
%\includegraphics[height = 0.8cm]{nwo_logo_en}
%\hspace{1.5cm}\includegraphics[height = 0.7cm]{gen2phen_logo}
}
\usetheme{lumc}
\begin{document}
% This disables the \pause command, handy in the editing phase.
%\renewcommand{\pause}{}
% Make the title page.
\bodytemplate
% First page of the presentation.
\section{Bioinformatics}
\begin{frame}
\frametitle{Activities}
Education:
\begin{itemize}
\item Courses: NGS introduction, Linux, scientific programming, \ldots
\item Internships.
\end{itemize}
\bigskip
Analyses:
\begin{itemize}
\item Resequencing: Exome, Full genome.
\item De novo assembly: Springtail, Cobra, Clavipes, \ldots
\item Expression: RNASeq, SAGE, CAGE, \ldots
\end{itemize}
\bigskip
Infrastructure:
\begin{itemize}
\item NGS LIMS.
\item High performance computing cluster.
\item Variant databases.
\end{itemize}
\end{frame}
\begin{frame}
\frametitle{An example workflow}
\begin{figure}
\includegraphics[width=\textwidth, height=0.9\textheight]{gapss3}
\caption{GAPSS3 exome pipeline}
\end{figure}
\end{frame}
\section{Questions?}
\lastpagetemplate
\begin{frame}
\begin{center}
Acknowledgements:
\bigskip
\bigskip
Michiel van Galen
Martijn Vermaat
Michel Villerius
Yayha Anvar
Zuotian Tatum
Jaap van der Heijden
Fedde Schaeffer
Hailiang Mei
Ken Kraaijeveld
Johan den Dunnen
\end{center}
\end{frame}
\end{document}
../../submodules/presentation/lgtc_logo.eps
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../../submodules/presentation/lumc_logo.eps
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../../submodules/presentation/lumc_logo_small.eps
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../../submodules/presentation/nbic_logo.eps
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../../submodules/presentation/ngi_logo.eps
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../../submodules/presentation/nwo_logo_en.eps
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../../submodules/presentation/nwo_logo_nl.eps
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../../submodules/presentation/ul_logo.eps
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