bioassist_intro.tex 2.84 KB
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\documentclass[slidestop]{beamer}

\title{BioAssist NGS}
\providecommand{\myConference}{BioAssist NGS}
\providecommand{\myDate}{Friday, 17 May 2013}
\author{Jeroen F. J. Laros}
\providecommand{\myGroup}{Leiden Genome Technology Center}
\providecommand{\myDepartment}{Department of Human Genetics}
\providecommand{\myCenter}{Center for Human and Clinical Genetics}
\providecommand{\lastCenterLogo}{
  \raisebox{-0.1cm}{
    %\includegraphics[height = 1cm]{lgtc_logo}
    %\includegraphics[height = 0.7cm]{ngi_logo}
  }
}
\providecommand{\lastRightLogo}{
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  \includegraphics[height = 0.7cm]{logos/nbic_logo}
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  %\includegraphics[height = 0.8cm]{nwo_logo_en}
  %\hspace{1.5cm}\includegraphics[height = 0.7cm]{gen2phen_logo}
}

\usetheme{lumc}

\begin{document}

% This disables the \pause command, handy in the editing phase.
%\renewcommand{\pause}{}

% Make the title page.
\bodytemplate

% First page of the presentation.
\section{Updates}
\begin{frame}
  \frametitle{Enlighten Your Research}

  \emph{Dynamic and Seamless Cluster Expansion} using the \emph{cluster in the
  cloud}.
  \bigskip
  \pause

  Collaboration between UMCG and LUMC.
  \bigskip

  Aims:
  \begin{itemize}
    \item Dynamic expansion of local clusters.
    \pause
    \item Secure access from SARA to local storage.
    \item Authentication using local credentials (SURFconext).
    \pause
    \item Potentially we can merge clusters using the cloud cluster as a hub.
  \end{itemize}
\end{frame}

\begin{frame}[fragile]
  \frametitle{Distributing programs}

  Via PyPI - the Python Package Index.
  \bigskip
  \pause
  
  \begin{itemize}
    \item Anyone can install your software easily.
    \item Dependencies are automatically installed.
    \item No more sharing of scripts.
    \begin{itemize}
      \item \ldots that need the help of the developer to run.
    \end{itemize}
  \end{itemize}
  \bigskip
  \bigskip
  \pause

  \begin{lstlisting}[language=bash]
    pip install tssv
  \end{lstlisting}
\end{frame}

\begin{fframe}
  \frametitle{Released packages}

  We currently have released the following packages:
  \begin{itemize}
    \item wiggelen
    \item fastools
    \item piletools
    \item barcode
    \item tssv
    \item kMer
  \end{itemize}

  \vfill
  \permfoot{https://pypi.python.org/}
\end{fframe}

\section{Schedule}
\begin{frame}
  \frametitle{Agenda}

  \begin{tabular}{r@{:}l@{\ --\ }r@{:}llp{4cm}}
    09 & 00 & 09 & 10 & Jeroen Laros      & Introduction\\
    09 & 10 & 09 & 45 & Duong Vu          & LIMS for DNA barcoding workflow\\
    09 & 45 & 10 & 20 & Wibowo Arindrarto & RNAseq pipeline (quality control, report, and Galaxy)\\
    10 & 20 & 10 & 30 & Jeroen Laros      & Update from participants \& Parking lot\\
  \end{tabular}
\end{frame}

\section{Questions?}
\lastpagetemplate
\begin{frame}
  \begin{center}
    Acknowledgements:
    \bigskip
    \bigskip

  \end{center}
\end{frame}

\end{document}