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@article{ KLIB,
keywords  = {jlaros_prep},
author    = "Anvar, S.Y. and Khachatryan, L. and Pulyakhina, I. and
  van Galen, M. and Laros, J.F.J.",
title     = "Applications of kmer profiling in omics data analysis.",
journal   = "In preparation",
year      = 2013
}

@article{ TSSV,
keywords  = {jlaros_prep},
author    = "Anvar, S.Y. and van der Heijden, J.W.F. van der Gaag, K.J. and
  Vossen, R.H.A.M. and Buermans, H.P.J. and Veltrop, M.H.A.M. and
  Verbeek, J.S. and den Dunnen, J.T. and de Knijff, P. and Laros, J.F.J.",
title     = "Targeted characterisation of short structural variation.",
journal   = "In preparation",
year      = 2013
}

@article{ GONLPOS,
keywords  = {jlaros, top},
author    = "Boomsma, D.I. and Wijmenga, C. and  Slagboom, E.P. and Swertz,
  M.A. and Karssen, L.C. and Abellaoui, A. and Ye, K. and Guryev, V. and
  Vermaat, M. and  van Dijk, F. and  Francioli, L. and Hottenga, J.J. and
  Laros, J.F.J. and Li, Q. and  Li, Y. and  Cao, H. and  Chen, R. and  Du, Y.
  and  Li, N. and Cao, S. and  van Setten, J. and Menelaou, A. and  Pulit, S.L.
  and Beekman, M. and Byelas, H. and  de Craen, A.J.M and Deelen, P. and
  Dijkstra, M. and  den Dunnen, J.T. and Houwing-Duistermaat, J. and Estrada,
  K. and Hofman, A. and Kanterakis, A. and Kattenberg, M. and van Leeuwen, E.
  and Neerincx, P.B. and Oostra, B. and Rivadeneira, F. and Suchiman, E.H.D.
  and Uitterlinden, A.G. and  Willemsen, G. and Wolffenbuttel, B.H. and  Wang,
  J. and de Bakker, P. and van Ommen (6), G. J. and van Duijn C.M.",
title     = "{{T}he {G}enome of the {N}etherlands: design, and project goals}",
journal   = "Eur. J. Hum. Genet.",
year      = "2013",
month     = "May"
}

@inproceedings{ BCKLK,
keywords  = {jlaros},
author    = "Bruin, J.S. de and Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.
             and Kok, J.N.",
title     = "Data mining approaches to criminal career analysis",
booktitle = "Proceedings of the Sixth IEEE International Conference on Data
             Mining {(ICDM 2006)}",
publisher = "IEEE",
pages     = "171-177",
year      = 2006
}

@inproceedings{ BCKLK2,
keywords  = {jlaros},
author    = "Bruin, J.S. de and Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.
             and Kok, J.N.",
title     = "Onto Clustering of Criminal Careers",
booktitle = "Proceedings of the Workshop on Practical Data Mining:
             Applications, Experiences and Challenges {(ECML/PKDD-2006)}",
publisher = "IEEE",
pages     = "90--93",
year      = 2006
}

@inproceedings{ cocx_2008_3,
keywords  = {jlaros},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "An Early Warning System for the Prediction of Criminal Careers",
booktitle = "{MICAI} 2008: Advances in Artificial Intelligence",
series    = "{LNAI}",
volume    = 5317,
pages     = "77--89",
publisher = "Springer",
year      = 2008
}

@inproceedings{ TESC,
keywords  = {jlaros, top},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "Temporal extrapolation within a static clustering",
booktitle = "Foundations of Intelligent Systems, Proceedings of ISMIS 2008",
publisher = "Springer",
series    = "LNAI",
volume    = "4994",
pages     = "189--195",
year      = 2008
}

@inproceedings{ cocx_2008_4,
keywords  = {jlaros},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "Temporal Extrapolation within a Static Clustering",
booktitle = "Proceedings of the 20th Belgium-Netherlands Conference on
             Artificial Intelligence {(BNAIC 2008)}",
pages     = "295--296",
year      = 2008
}

@inproceedings{ cocx_atlanta,
keywords  = {jlaros, top},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "Enhancing the Automated Analysis of Criminal Careers",
booktitle = "{SIAM} Workshop on Link Analysis, Counterterrorism, and Security
             2008 {(LACTS2008)}",
publisher = "{SIAM} Press",
year      = 2008
}

@Article{ LOVD2,
keywords  = {jlaros, top},
author    = "Fokkema, I.F. and Taschner, P.E.M. and Schaafsma, G.C.P. and
             Celli, J. and Laros, J.F.J. and den Dunnen, J.T.",
title     = {LOVD2.0: The next generation in gene variant databases},
journal   = {Hum Mutat},
volume    = {32},
year      = {2011},
pages     = {557-563},
doi       = {10.1002/humu.21438},
pubmedid  = {21520333},
note      = {(doi:10.1002/humu.21438)},
}

@article{10.1371/journal.pone.0055734,
keywords  = {jlaros},
author    = {Hilbers, F.S. AND Meijers, C.M. AND Laros, J.F.J. AND
  van Galen, M. AND Hoogerbrugge, N. AND Vasen, H.F.A. AND Nederlof, P.M. AND
  Wijnen, J.T. AND van Asperen, C.J. AND Devilee, P.},
journal   = {PLoS ONE},
publisher = {Public Library of Science},
title     = {Exome Sequencing of Germline DNA from Non-BRCA1/2 Familial Breast
  Cancer Cases Selected on the Basis of aCGH Tumor Profiling},
year      = {2013},
month     = {01},
volume    = {8},
url       = {http://dx.doi.org/10.1371%2Fjournal.pone.0055734},
pages     = {e55734},
number    = {1},
doi = {10.1371/journal.pone.0055734}
}

@Article{ REPR_RNA,
keywords  = {jlaros, top},
author    = "'t Hoen, P.A.C. and Friedlander, M.R. and Almlof, J. and
  Sammeth, M. and Pulyakhina, I. and Anvar, S.Y. and Laros, J.F.J. and
  Buermans, H.P.J. and Antonorakis, S.E. and Brazma, A. and Flicek, P. and
  Schreiber, S. and Rosenstiel, P. and Meitinger, T. and Strom, T.M. and
  Lehrach, H. and Sudbrak, R. and Carracedo, A. and van Iterson, M. and
  Monlong, J. and Lizano, E. and Bertier, G. and Ferreira, P.G. and
  Karlberg, O. and Brannvall, M. and Ribeca, P. and Griebel, T. and Beltran, S.
  and Gut, M. and Kahlem, K. and Giger, T. and Ongen, H. and Padioleau, I. and
  Kilpinen, H. and Gonzalez-Porta, M. and Kurbatova, N. and Tikhonov, A. and
  Greger, L. and Barann, M. and Esser, D. and Hasler, R. and Wieland, T. and
  Schwarzmayr, T. and Sultan, M. and Amstislavskiy, V. and den Dunnen, J.T. and
  van Ommen, G.J. and Gut, I.G. and Guigo, R. and Estivill, X. and
  Syvanen, A.C. and Dermitzakis, E.T. and Lappalainen, T.",
title     = "{{R}eproducibility of high-throughput m{R}{N}{A} and small
  {R}{N}{A} sequencing across laboratories}",
journal   = "Nat. Biotechnol.",
year      = "2013",
month     = "Sep"
}

@article{ HKL,
keywords  = {jlaros, top},
author    = "Hoogeboom, H.J. and Kosters, W.A. and Laros, J.F.J.",
title     = "Selection of {DNA} markers",
journal   = "IEEE Transactions on Systems, Man, and Cybernetics Part C",
volume    = 38,
pages     = "26--32",
year      = 2008
}

@inproceedings{ SD,
keywords  = {jlaros},
author    = "Hoogeboom, H.J. and Kosters, W.A. and Laros, J.F.J.",
title     = "Substring Differences in Genomes",
booktitle = "Proceedings of the Benelux Bioinformatics Conference {BBC 2008}",
pages     = "62",
year      = 2008
}

@article{ hgvs_bnf,
keywords  = {jlaros, top},
author    = "Laros, J.F.J. and Blavier, A. and den Dunnen, J.T. and
             Taschner, P.E.M.",
title     = "A formalized description of the standard human variant
             nomenclature in Extended Backus-Naur Form",
journal   = {BMC Bioinformatics},
volume    = {12},
year      = {2011},
number    = {Suppl 4},
pages     = {S5},
url       = {http://www.biomedcentral.com/1471-2105/12/S4/S5},
doi       = {10.1186/1471-2105-12-S4-S5},
pubmedid  = {21992071},
issn      = {1471-2105}
}

@article{ MUT2,
keywords  = {jlaros},
author    = "Laros, J.F.J. and Vermaat, M. and Stouten, G.R. and
  den Dunnen, J.T. and Taschner, P.E.M.",
title     = "Mutalyzer 2.0.",
journal   = "In preparation",
year      = 2013
}

@article{ API,
keywords  = {jlaros_nopub},
author    = "Laros, J.F.J.",
title     = "Mutalyzer 2.0 {API} documentation.",
journal   = "Internal document",
year      = 2010
}

@article{DBLP:journals/corr/abs-cs-0605076,
  keywords  = {jlaros_preprint},
  author    = {Laros, J.F.J.},
  title     = {Numeration-automatic sequences},
  journal   = {CoRR},
  volume    = {abs/cs/0605076},
  year      = {2006},
  ee        = {http://arxiv.org/abs/cs/0605076},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@article{DBLP:journals/corr/abs-0811-3140,
  keywords  = {jlaros_preprint},
  author    = {Hansen, M. and Laros, J.F.J.},
  title     = {Desynched channels on IRCnet},
  journal   = {CoRR},
  volume    = {abs/0811.3140},
  year      = {2008},
  ee        = {http://arxiv.org/abs/0811.3140},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{ MMM,
keywords  = {jlaros, top},
author    = "Kosters, W.A. and Laros, J.F.J.",
title     = "Metrics for Mining Multisets",
booktitle = "Research and Development in Intelligent Systems XXIV, Proceedings
             of {AI-2007}",
publisher = "Springer",
pages     = "293--303",
year      = 2007
}

@incollection{ RNLDR,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {On Randomised Non-Linear Dimension Reduction},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "11--23",
year      = 2009
}

@incollection{ ERRVIS,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {Error Visualisation in the Particle Model},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "35--42",
year      = 2009
}

@incollection{ TMPEXT,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {Temporal Extrapolation Using the Particle Model},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "43--49",
year      = 2009
}

@incollection{ MULTALN,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {Alignment of Multiset Sequences},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "63--75",
year      = 2009
}

@inproceedings{ MMM2,
keywords  = {jlaros},
author    = "Kosters, W.A. and Laros, J.F.J.",
title     = "Metrics for Mining Multisets",
booktitle = "Proceedings of the 20th Belgium-Netherlands Conference on
             Artificial Intelligence {(BNAIC 2008)}",
pages     = "329--330",
year      = 2007
}

@inproceedings{ VCS,
keywords  = {jlaros, top},
author    = "Kosters, W.A. and Laros, J.F.J.",
title     = "Visualisation on a closed surface",
booktitle = "Proceedings of the 19th Belgium-Netherlands Conference on
             Artificial Intelligence {(BNAIC 2007)}",
pages     = "189--195",
year      = 2007
}

@incollection{ DNAV,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Hoogeboom, H.J. and Kosters, W.A. and Verduyn
  Lunel, S.M.",
title     = "Visualising {DNA} with {R}auzy Projections",
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "111--119",
year      = 2009
}

@article{ MDMD,
keywords  = {jlaros},
author    = "Spitali, P. and van den Bergen, J. and Verhaart, I. and Wokke, B.
  and Janson, A. and van den Eijnde, R. and Den Dunnen, J.T. and Laros, J.F.J.
  and Verschuuren, J. and t'Hoen, P.B. and Aartsma-Rus, A.",
title     = "DMD transcript imbalance regulates dystrophin levels",
url       = {http://www.fasebj.org/content/early/2013/08/22/fj.13-232025.abstract}, 
eprint    = {http://www.fasebj.org/content/early/2013/08/22/fj.13-232025.full.pdf+html}, 
journal   = {The FASEB Journal},
doi       = {10.1096/fj.13-232025}, 
year      = 2013
}

@Article{23143598,
keywords  = {jlaros, top},
author = "Sun, Y. and Bak, B. and Schoenmakers, N. and van Trotsenburg, A.S.P.
         and Oostdijk, W. and Voshol, P. and Cambridge, E. and White, J.K. and
         le Tissier, P. and Gharavy, S.N.M. and Martinez-Barbera, J.P. and
         Stokvis-Brantsma, W.H. and Vulsma, T. and Kempers, M.J. and Persani,
         L. and Campi, I. and Bonomi, M. and Beck-Peccoz, P. and Zhu, H. and
         Davis, T.M.E. and Hokken-Koelega, A.C.S. and Del Blanco, D.G. and
         Rangasami, J.J. and Ruivenkamp, C.A.L. and Laros, J.F.J. and Kriek, M.
         and Kant, S.G. and Bosch, C.A.J. and Biermasz, N.R. and
         Appelman-Dijkstra, N.M. and Corssmit, E.P. and Hovens, G.C.J. and
         Pereira, A.M. and Dunnen, J.T. and Wade, M.G. and Breuning, M.H. and
         Hennekam, R.C. and Chatterjee, K. and Dattani, M.T. and Wit, J.M. and
         Bernard, D.J.",
title  = "Loss-of-function mutations in {IGSF1} cause an {X}-linked syndrome of
         central hypothyroidism and testicular enlargement.",
journal = "Nature Genetics",
month   = "nov",
year    = 2012,
number  = 5,
doi     = "10.1038/ng.2453",
}

@inproceedings{Tatum:2011:CIG:2166896.2166924,
keywords  = {jlaros, Galaxy, MOTEUR, command line program, formal definitions, interface, reusable component, tool repository, workflow},
author    = {Tatum, Z. and den Dunnen, J.T. and Laros, J.F.J.},
title     = {CLI-mate: an interface generator for command line programs},
booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences},
series    = {SWAT4LS '11},
year      = {2012},
isbn      = {978-1-4503-1076-5},
location  = {London, United Kingdom},
pages     = {114--115},
numpages  = {2},
url       = {http://doi.acm.org/10.1145/2166896.2166924},
doi       = {10.1145/2166896.2166924},
acmid     = {2166924},
publisher = {ACM},
address   = {New York, NY, USA},
}

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@inproceedings{SA_REF,
keywords  = "jlaros",
author    = "Tatum, Z. and Roos, M. and Gibson, A.P. and Taschner, P.E.M. and
  Thompson, M. and Schultes, E.A. and Laros, J.F.J.",
title     = "Preserving sequence annotations across reference sequences",
volume    = 5,
number    = 1,
journal   = "Journal of Biomedical Semantics",
month     = "June",
year      = 2014
}

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@article{ WE,
keywords  = {jlaros, top},
author    = "Westen, A.A. and Matai, A. S. and Laros, J.F.J. and Meiland, H.C.
             and Jasper, M. and de Leeuw, W.J.F. and de Knijff, P. and
             Sijen, T.",
title     = "Tri-allelic {SNP} markers enable analysis of mixed and degraded
             {DNA} samples",
journal   = "Forensic Science International: Genetics",
volume    = 3,
number    = 4,
pages     = "233--241",
publisher = "Elzevier",
year      = 2009
}

@misc{ WD,
author    = "{WiggleDist}",
note      = "\begin{small}
               \texttt{https://humgenprojects.lumc.nl/svn/wiggledist/}
             \end{small}"
}

@Article{pmid24182360,
keywords={jlaros},
Author="Ye, K. and Beekman, M. and Lameijer, E.W. and Zhang, Y. and Moed, M.H.
  and van den Akker, E.B. and Deelen, J. and Houwing-Duistermaat, J.J. and
  Kremer, D. and Anvar, S.Y. and Laros, J.F.J. and Jones, D. and Raine, K. and
  Blackburne, B. and Potluri, S. and Long, Q. and Guryev, V. and van der
  Breggen, R. and Westendorp, R.G. and 't Hoen, P.A.C. and den Dunnen, J.T. and
  van Ommen, G.J. and Willemsen, G. and Pitts, S.J. and Cox, D.R. and Ning, Z.
  and Boomsma, D.I. and Slagboom, P.E. ",
Title="{{A}ging as accelerated accumulation of somatic variants: whole-genome
  sequencing of centenarian and middle-aged monozygotic twin pairs}",
Journal="Twin Res Hum Genet",
Year="2013",
Volume="16",
Number="6",
Pages="1026--1032",
Month="Dec"
}