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@article{ KLIB,
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keywords  = {jlaros, top, 2014},
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author    = "Anvar, S.Y. and Khachatryan, L. and Vermaat, M. and van Galen, M.
  and Pulyakhina, I. and Ariyurek, Y. and Kraaijeveld, K. and den Dunnen, J.T.
  and de Knijff, P. and 't Hoen, P.A.C. and Laros, J.F.J.",
title     = "Determining the quality and complexity of next-generation
  sequencing data without a reference genome.",
journal   = "Genome Biol.",
month     = dec,
day       = 17,
year      = 2014,
volume    = 15,
issue     = 12
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}

@article{ TSSV,
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keywords  = {jlaros, top, 2014},
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author    = "Anvar, S.Y. and van der Gaag, K.J. and van der Heijden, J.W.F. and
  Veltrop, M.H.A.M. and Vossen, R.H.A.M. and de Leeuw, R.H. and Breukel, C. and
  Buermans, H.P.J. and Verbeek, J.S. and de Knijff, P. den Dunnen, J.T. and
  Laros, J.F.J.",
title     = "{TSSV}: a tool for characterization of complex allelic variants in
  pure and mixed genomes.",
journal   = "Bioinformatics",
month     = jun,
day       = 15,
volume    = 30,
issue     = 12,
year      = 2014
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}

@article{ GONLPOS,
keywords  = {jlaros, top},
author    = "Boomsma, D.I. and Wijmenga, C. and  Slagboom, E.P. and Swertz,
  M.A. and Karssen, L.C. and Abellaoui, A. and Ye, K. and Guryev, V. and
  Vermaat, M. and  van Dijk, F. and  Francioli, L. and Hottenga, J.J. and
  Laros, J.F.J. and Li, Q. and  Li, Y. and  Cao, H. and  Chen, R. and  Du, Y.
  and  Li, N. and Cao, S. and  van Setten, J. and Menelaou, A. and  Pulit, S.L.
  and Beekman, M. and Byelas, H. and  de Craen, A.J.M and Deelen, P. and
  Dijkstra, M. and  den Dunnen, J.T. and Houwing-Duistermaat, J. and Estrada,
  K. and Hofman, A. and Kanterakis, A. and Kattenberg, M. and van Leeuwen, E.
  and Neerincx, P.B. and Oostra, B. and Rivadeneira, F. and Suchiman, E.H.D.
  and Uitterlinden, A.G. and  Willemsen, G. and Wolffenbuttel, B.H. and  Wang,
  J. and de Bakker, P. and van Ommen (6), G. J. and van Duijn C.M.",
title     = "{{T}he {G}enome of the {N}etherlands: design, and project goals}",
journal   = "Eur. J. Hum. Genet.",
year      = "2013",
month     = "May"
}

@inproceedings{ BCKLK,
keywords  = {jlaros},
author    = "Bruin, J.S. de and Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.
             and Kok, J.N.",
title     = "Data mining approaches to criminal career analysis",
booktitle = "Proceedings of the Sixth IEEE International Conference on Data
             Mining {(ICDM 2006)}",
publisher = "IEEE",
pages     = "171-177",
year      = 2006
}

@inproceedings{ BCKLK2,
keywords  = {jlaros},
author    = "Bruin, J.S. de and Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.
             and Kok, J.N.",
title     = "Onto Clustering of Criminal Careers",
booktitle = "Proceedings of the Workshop on Practical Data Mining:
             Applications, Experiences and Challenges {(ECML/PKDD-2006)}",
publisher = "IEEE",
pages     = "90--93",
year      = 2006
}

@inproceedings{ cocx_2008_3,
keywords  = {jlaros},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "An Early Warning System for the Prediction of Criminal Careers",
booktitle = "{MICAI} 2008: Advances in Artificial Intelligence",
series    = "{LNAI}",
volume    = 5317,
pages     = "77--89",
publisher = "Springer",
year      = 2008
}

@inproceedings{ TESC,
keywords  = {jlaros, top},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "Temporal extrapolation within a static clustering",
booktitle = "Foundations of Intelligent Systems, Proceedings of ISMIS 2008",
publisher = "Springer",
series    = "LNAI",
volume    = "4994",
pages     = "189--195",
year      = 2008
}

@inproceedings{ cocx_2008_4,
keywords  = {jlaros},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "Temporal Extrapolation within a Static Clustering",
booktitle = "Proceedings of the 20th Belgium-Netherlands Conference on
             Artificial Intelligence {(BNAIC 2008)}",
pages     = "295--296",
year      = 2008
}

@inproceedings{ cocx_atlanta,
keywords  = {jlaros, top},
author    = "Cocx, T.K. and Kosters, W.A. and Laros, J.F.J.",
title     = "Enhancing the Automated Analysis of Criminal Careers",
booktitle = "{SIAM} Workshop on Link Analysis, Counterterrorism, and Security
             2008 {(LACTS2008)}",
publisher = "{SIAM} Press",
year      = 2008
}

@Article{ LOVD2,
keywords  = {jlaros, top},
author    = "Fokkema, I.F. and Taschner, P.E.M. and Schaafsma, G.C.P. and
             Celli, J. and Laros, J.F.J. and den Dunnen, J.T.",
title     = {LOVD2.0: The next generation in gene variant databases},
journal   = {Hum Mutat},
volume    = {32},
year      = {2011},
pages     = {557-563},
doi       = {10.1002/humu.21438},
pubmedid  = {21520333},
note      = {(doi:10.1002/humu.21438)},
}

@article{10.1371/journal.pone.0055734,
keywords  = {jlaros},
author    = {Hilbers, F.S. AND Meijers, C.M. AND Laros, J.F.J. AND
  van Galen, M. AND Hoogerbrugge, N. AND Vasen, H.F.A. AND Nederlof, P.M. AND
  Wijnen, J.T. AND van Asperen, C.J. AND Devilee, P.},
journal   = {PLoS ONE},
publisher = {Public Library of Science},
title     = {Exome Sequencing of Germline DNA from Non-BRCA1/2 Familial Breast
  Cancer Cases Selected on the Basis of aCGH Tumor Profiling},
year      = {2013},
month     = {01},
volume    = {8},
url       = {http://dx.doi.org/10.1371%2Fjournal.pone.0055734},
pages     = {e55734},
number    = {1},
doi = {10.1371/journal.pone.0055734}
}

@Article{ REPR_RNA,
keywords  = {jlaros, top},
author    = "'t Hoen, P.A.C. and Friedlander, M.R. and Almlof, J. and
  Sammeth, M. and Pulyakhina, I. and Anvar, S.Y. and Laros, J.F.J. and
  Buermans, H.P.J. and Antonorakis, S.E. and Brazma, A. and Flicek, P. and
  Schreiber, S. and Rosenstiel, P. and Meitinger, T. and Strom, T.M. and
  Lehrach, H. and Sudbrak, R. and Carracedo, A. and van Iterson, M. and
  Monlong, J. and Lizano, E. and Bertier, G. and Ferreira, P.G. and
  Karlberg, O. and Brannvall, M. and Ribeca, P. and Griebel, T. and Beltran, S.
  and Gut, M. and Kahlem, K. and Giger, T. and Ongen, H. and Padioleau, I. and
  Kilpinen, H. and Gonzalez-Porta, M. and Kurbatova, N. and Tikhonov, A. and
  Greger, L. and Barann, M. and Esser, D. and Hasler, R. and Wieland, T. and
  Schwarzmayr, T. and Sultan, M. and Amstislavskiy, V. and den Dunnen, J.T. and
  van Ommen, G.J. and Gut, I.G. and Guigo, R. and Estivill, X. and
  Syvanen, A.C. and Dermitzakis, E.T. and Lappalainen, T.",
title     = "{{R}eproducibility of high-throughput m{R}{N}{A} and small
  {R}{N}{A} sequencing across laboratories}",
journal   = "Nat. Biotechnol.",
year      = "2013",
month     = "Sep"
}

@article{ HKL,
keywords  = {jlaros, top},
author    = "Hoogeboom, H.J. and Kosters, W.A. and Laros, J.F.J.",
title     = "Selection of {DNA} markers",
journal   = "IEEE Transactions on Systems, Man, and Cybernetics Part C",
volume    = 38,
pages     = "26--32",
year      = 2008
}

@inproceedings{ SD,
keywords  = {jlaros},
author    = "Hoogeboom, H.J. and Kosters, W.A. and Laros, J.F.J.",
title     = "Substring Differences in Genomes",
booktitle = "Proceedings of the Benelux Bioinformatics Conference {BBC 2008}",
pages     = "62",
year      = 2008
}

@article{ hgvs_bnf,
keywords  = {jlaros, top},
author    = "Laros, J.F.J. and Blavier, A. and den Dunnen, J.T. and
             Taschner, P.E.M.",
title     = "A formalized description of the standard human variant
             nomenclature in Extended Backus-Naur Form",
journal   = {BMC Bioinformatics},
volume    = {12},
year      = {2011},
number    = {Suppl 4},
pages     = {S5},
url       = {http://www.biomedcentral.com/1471-2105/12/S4/S5},
doi       = {10.1186/1471-2105-12-S4-S5},
pubmedid  = {21992071},
issn      = {1471-2105}
}

@article{ MUT2,
keywords  = {jlaros},
author    = "Laros, J.F.J. and Vermaat, M. and Stouten, G.R. and
  den Dunnen, J.T. and Taschner, P.E.M.",
title     = "Mutalyzer 2.0.",
journal   = "In preparation",
year      = 2013
}

@article{ API,
keywords  = {jlaros_nopub},
author    = "Laros, J.F.J.",
title     = "Mutalyzer 2.0 {API} documentation.",
journal   = "Internal document",
year      = 2010
}

@article{DBLP:journals/corr/abs-cs-0605076,
  keywords  = {jlaros_preprint},
  author    = {Laros, J.F.J.},
  title     = {Numeration-automatic sequences},
  journal   = {CoRR},
  volume    = {abs/cs/0605076},
  year      = {2006},
  ee        = {http://arxiv.org/abs/cs/0605076},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@article{DBLP:journals/corr/abs-0811-3140,
  keywords  = {jlaros_preprint},
  author    = {Hansen, M. and Laros, J.F.J.},
  title     = {Desynched channels on IRCnet},
  journal   = {CoRR},
  volume    = {abs/0811.3140},
  year      = {2008},
  ee        = {http://arxiv.org/abs/0811.3140},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{ MMM,
keywords  = {jlaros, top},
author    = "Kosters, W.A. and Laros, J.F.J.",
title     = "Metrics for Mining Multisets",
booktitle = "Research and Development in Intelligent Systems XXIV, Proceedings
             of {AI-2007}",
publisher = "Springer",
pages     = "293--303",
year      = 2007
}

@incollection{ RNLDR,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {On Randomised Non-Linear Dimension Reduction},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "11--23",
year      = 2009
}

@incollection{ ERRVIS,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {Error Visualisation in the Particle Model},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "35--42",
year      = 2009
}

@incollection{ TMPEXT,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {Temporal Extrapolation Using the Particle Model},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "43--49",
year      = 2009
}

@incollection{ MULTALN,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Kosters, W.A.",
title     = {Alignment of Multiset Sequences},
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "63--75",
year      = 2009
}

@inproceedings{ MMM2,
keywords  = {jlaros},
author    = "Kosters, W.A. and Laros, J.F.J.",
title     = "Metrics for Mining Multisets",
booktitle = "Proceedings of the 20th Belgium-Netherlands Conference on
             Artificial Intelligence {(BNAIC 2008)}",
pages     = "329--330",
year      = 2007
}

@inproceedings{ VCS,
keywords  = {jlaros, top},
author    = "Kosters, W.A. and Laros, J.F.J.",
title     = "Visualisation on a closed surface",
booktitle = "Proceedings of the 19th Belgium-Netherlands Conference on
             Artificial Intelligence {(BNAIC 2007)}",
pages     = "189--195",
year      = 2007
}

@incollection{ DNAV,
keywords  = {jlaros_chap},
author    = "Laros, J.F.J. and Hoogeboom, H.J. and Kosters, W.A. and Verduyn
  Lunel, S.M.",
title     = "Visualising {DNA} with {R}auzy Projections",
editor    = "Laros, J.F.J.",
booktitle = "{M}etrics and {V}isualisation for {C}rime {A}nalysis and
  {G}enomics",
pages     = "111--119",
year      = 2009
}

@article{ MDMD,
keywords  = {jlaros},
author    = "Spitali, P. and van den Bergen, J. and Verhaart, I. and Wokke, B.
  and Janson, A. and van den Eijnde, R. and Den Dunnen, J.T. and Laros, J.F.J.
  and Verschuuren, J. and t'Hoen, P.B. and Aartsma-Rus, A.",
title     = "DMD transcript imbalance regulates dystrophin levels",
url       = {http://www.fasebj.org/content/early/2013/08/22/fj.13-232025.abstract}, 
eprint    = {http://www.fasebj.org/content/early/2013/08/22/fj.13-232025.full.pdf+html}, 
journal   = {The FASEB Journal},
doi       = {10.1096/fj.13-232025}, 
year      = 2013
}

@Article{23143598,
keywords  = {jlaros, top},
author = "Sun, Y. and Bak, B. and Schoenmakers, N. and van Trotsenburg, A.S.P.
         and Oostdijk, W. and Voshol, P. and Cambridge, E. and White, J.K. and
         le Tissier, P. and Gharavy, S.N.M. and Martinez-Barbera, J.P. and
         Stokvis-Brantsma, W.H. and Vulsma, T. and Kempers, M.J. and Persani,
         L. and Campi, I. and Bonomi, M. and Beck-Peccoz, P. and Zhu, H. and
         Davis, T.M.E. and Hokken-Koelega, A.C.S. and Del Blanco, D.G. and
         Rangasami, J.J. and Ruivenkamp, C.A.L. and Laros, J.F.J. and Kriek, M.
         and Kant, S.G. and Bosch, C.A.J. and Biermasz, N.R. and
         Appelman-Dijkstra, N.M. and Corssmit, E.P. and Hovens, G.C.J. and
         Pereira, A.M. and Dunnen, J.T. and Wade, M.G. and Breuning, M.H. and
         Hennekam, R.C. and Chatterjee, K. and Dattani, M.T. and Wit, J.M. and
         Bernard, D.J.",
title  = "Loss-of-function mutations in {IGSF1} cause an {X}-linked syndrome of
         central hypothyroidism and testicular enlargement.",
journal = "Nature Genetics",
month   = "nov",
year    = 2012,
number  = 5,
doi     = "10.1038/ng.2453",
}

@inproceedings{Tatum:2011:CIG:2166896.2166924,
keywords  = {jlaros, Galaxy, MOTEUR, command line program, formal definitions, interface, reusable component, tool repository, workflow},
author    = {Tatum, Z. and den Dunnen, J.T. and Laros, J.F.J.},
title     = {CLI-mate: an interface generator for command line programs},
booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences},
series    = {SWAT4LS '11},
year      = {2012},
isbn      = {978-1-4503-1076-5},
location  = {London, United Kingdom},
pages     = {114--115},
numpages  = {2},
url       = {http://doi.acm.org/10.1145/2166896.2166924},
doi       = {10.1145/2166896.2166924},
acmid     = {2166924},
publisher = {ACM},
address   = {New York, NY, USA},
}

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@inproceedings{SA_REF,
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keywords  = "jlaros, 2014",
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author    = "Tatum, Z. and Roos, M. and Gibson, A.P. and Taschner, P.E.M. and
  Thompson, M. and Schultes, E.A. and Laros, J.F.J.",
title     = "Preserving sequence annotations across reference sequences",
volume    = 5,
number    = 1,
journal   = "Journal of Biomedical Semantics",
month     = "June",
year      = 2014
}

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@article{ WE,
keywords  = {jlaros, top},
author    = "Westen, A.A. and Matai, A. S. and Laros, J.F.J. and Meiland, H.C.
             and Jasper, M. and de Leeuw, W.J.F. and de Knijff, P. and
             Sijen, T.",
title     = "Tri-allelic {SNP} markers enable analysis of mixed and degraded
             {DNA} samples",
journal   = "Forensic Science International: Genetics",
volume    = 3,
number    = 4,
pages     = "233--241",
publisher = "Elzevier",
year      = 2009
}

@misc{ WD,
author    = "{WiggleDist}",
note      = "\begin{small}
               \texttt{https://humgenprojects.lumc.nl/svn/wiggledist/}
             \end{small}"
}

@Article{pmid24182360,
keywords={jlaros},
Author="Ye, K. and Beekman, M. and Lameijer, E.W. and Zhang, Y. and Moed, M.H.
  and van den Akker, E.B. and Deelen, J. and Houwing-Duistermaat, J.J. and
  Kremer, D. and Anvar, S.Y. and Laros, J.F.J. and Jones, D. and Raine, K. and
  Blackburne, B. and Potluri, S. and Long, Q. and Guryev, V. and van der
  Breggen, R. and Westendorp, R.G. and 't Hoen, P.A.C. and den Dunnen, J.T. and
  van Ommen, G.J. and Willemsen, G. and Pitts, S.J. and Cox, D.R. and Ning, Z.
  and Boomsma, D.I. and Slagboom, P.E. ",
Title="{{A}ging as accelerated accumulation of somatic variants: whole-genome
  sequencing of centenarian and middle-aged monozygotic twin pairs}",
Journal="Twin Res Hum Genet",
Year="2013",
Volume="16",
Number="6",
Pages="1026--1032",
Month="Dec"
}
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@article{Lips_2014,
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keywords={jlaros, 2014},
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title={Roux-en-Y Gastric Bypass Surgery, but Not Calorie Restriction, Reduces
  Plasma Branched-Chain Amino Acids in Obese Women Independent of Weight Loss
  or the Presence of Type 2 Diabetes},
volume={37},
ISSN={1935-5548},
url={http://dx.doi.org/10.2337/dc14-0195},
DOI={10.2337/dc14-0195},
number={12},
journal={Diabetes Care},
publisher={American Diabetes Association},
author={Lips, M.A. and Van Klinken, J.B. and van Harmelen, V. and Dharuri, H.
K. and  't Hoen, P.A.C. and Laros, J.F.J. and van Ommen, G.-J. and Janssen,
I.M. and Van Ramshorst, B. and Van Wagensveld, B.A. and et al.},
year={2014},
month={Oct},
pages={3150–3156}
}

@article{Dharuri_2014,
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keywords = {jlaros, 2014},
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title={Downregulation of the acetyl-CoA metabolic network in adipose tissue of
  obese diabetic individuals and recovery after weight loss},
volume={57},
ISSN={1432-0428},
url={http://dx.doi.org/10.1007/s00125-014-3347-0},
DOI={10.1007/s00125-014-3347-0},
number={11},
journal={Diabetologia},
publisher={Springer Science + Business Media},
author={Dharuri, Harish and 't Hoen, Peter A.C. and van Klinken, Jan B. and
  Henneman, Peter and Laros, Jeroen F. J. and Lips, Mirjam A. and el
  Bouazzaoui, Fatiha and van Ommen, Gert-Jan B. and Janssen, Ignace and van
  Ramshorst, Bert and et al.},
year={2014},
month={Aug},
pages={2384–2392}
}

@article{Francioli_2014,
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keywords = {consortium, c_2014},
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title={Whole-genome sequence variation, population structure and demographic
  history of the Dutch population},
volume={46},
ISSN={1546-1718},
url={http://dx.doi.org/10.1038/ng.3021},
DOI={10.1038/ng.3021},
number={8},
journal={Nature Genetics},
publisher={Nature Publishing Group},
author={Francioli, Laurent C and Menelaou, Androniki and Pulit, Sara L and van
  Dijk, Freerk and Palamara, Pier Francesco and Elbers, Clara C and Neerincx,
  Pieter B T and Ye, Kai and Guryev, Victor and Kloosterman, Wigard P and et
  al.},
year={2014},
month={Jun},
pages={818–825}
}

@article{Hasegawa_2014,
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keywords = {consortium, c_2014},
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title={CCL2 enhances pluripotency of human induced pluripotent stem cells by
  activating hypoxia related genes},
volume={4},
ISSN={2045-2322},
url={http://dx.doi.org/10.1038/srep05228},
DOI={10.1038/srep05228},
journal={Sci. Rep.},
publisher={Nature Publishing Group},
author={Hasegawa, Yuki and Tang, Dave and Takahashi, Naoko and Hayashizaki,
  Yoshihide and Forrest, Alistair R. R. and the FANTOM consortium and Suzuki,
  Harukazu},
year={2014},
month={Jun}
}

@article{Deelen_2014,
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keywords = {consortium, c_2014},
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title={Improved imputation quality of low-frequency and rare variants in
  European samples using the “Genome of The Netherlands”},
volume={22},
ISSN={1476-5438},
url={http://dx.doi.org/10.1038/ejhg.2014.19},
DOI={10.1038/ejhg.2014.19},
number={11},
journal={European Journal of Human Genetics},
publisher={Nature Publishing Group},
author={Deelen, Patrick and Menelaou, Androniki and van Leeuwen, Elisabeth M
  and Kanterakis, Alexandros and van Dijk, Freerk and Medina-Gomez, Carolina
  and Francioli, Laurent C and Hottenga, Jouke Jan and Karssen, Lennart C and
  Estrada, Karol and et al.},
year={2014},
month={Jun},
pages={1321–1326}
}

@article{Morikawa_2014,
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keywords = {consortium, c_2014},
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title={Differential roles of epigenetic changes and Foxp3 expression in
  regulatory T cell-specific transcriptional regulation},
volume={111},
ISSN={1091-6490},
url={http://dx.doi.org/10.1073/pnas.1312717110},
DOI={10.1073/pnas.1312717110},
number={14},
journal={Proceedings of the National Academy of Sciences},
publisher={Proceedings of the National Academy of Sciences},
author={Morikawa, H. and Ohkura, N. and Vandenbon, A. and Itoh, M. and
  Nagao-Sato, S. and Kawaji, H. and Lassmann, T. and Carninci, P. and
  Hayashizaki, Y. and Forrest, A. R. R. and et al.},
year={2014},
month={Mar},
pages={5289–5294}
}

@article{Arner_2014,
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keywords = {consortium, c_2014},
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title={Ceruloplasmin Is a Novel Adipokine Which Is Overexpressed in Adipose
  Tissue of Obese Subjects and in Obesity-Associated Cancer Cells},
volume={9},
ISSN={1932-6203},
url={http://dx.doi.org/10.1371/journal.pone.0080274},
DOI={10.1371/journal.pone.0080274},
number={3},
journal={PLoS ONE},
publisher={Public Library of Science (PLoS)},
author={Arner, Erik and Forrest, Alistair R. R. and Ehrlund, Anna and Mejhert,
  Niklas and Itoh, Masayoshi and Kawaji, Hideya and Lassmann, Timo and
  Laurencikiene, Jurga and Rydén, Mikael and Arner, Peter},
editor={Wu, QiongEditor},
year={2014},
month={Mar},
pages={e80274}
}

@article{Forrest_2014,
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keywords={jlaros, 2014},
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title={A promoter-level mammalian expression atlas},
volume={507},
ISSN={1476-4687},
url={http://dx.doi.org/10.1038/nature13182},
DOI={10.1038/nature13182},
number={7493},
journal={Nature},
publisher={Nature Publishing Group},
author={Forrest, Alistair R. R. and Kawaji, Hideya and Rehli, Michael and
  Kenneth Baillie, J. and de Hoon, Michiel J. L. and Haberle, Vanja and
  Lassmann, Timo and Kulakovskiy, Ivan V. and Lizio, Marina and Itoh, Masayoshi
  and et al.},
year={2014},
month={Mar},
pages={462–470}
}

@article{Andersson_2014,
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title={An atlas of active enhancers across human cell types and tissues},
volume={507},
ISSN={1476-4687},
url={http://dx.doi.org/10.1038/nature12787},
DOI={10.1038/nature12787},
number={7493},
journal={Nature},
publisher={Nature Publishing Group},
author={Andersson, Robin and Gebhard, Claudia and Miguel-Escalada, Irene and
  Hoof, Ilka and Bornholdt, Jette and Boyd, Mette and Chen, Yun and Zhao,
  Xiaobei and Schmidl, Christian and Suzuki, Takahiro and et al.},
year={2014},
month={Mar},
pages={455–461}
}

@article{Kiezun_2013,
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keywords = {consortium, c_2013},
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title={Deleterious Alleles in the Human Genome Are on Average Younger Than
  Neutral Alleles of the Same Frequency},
volume={9},
ISSN={1553-7404},
url={http://dx.doi.org/10.1371/journal.pgen.1003301},
DOI={10.1371/journal.pgen.1003301},
number={2},
journal={PLoS Genet},
publisher={Public Library of Science (PLoS)},
author={Kiezun, Adam and Pulit, Sara L. and Francioli, Laurent C. and van Dijk,
  Freerk and Swertz, Morris and Boomsma, Dorret I. and van Duijn, Cornelia M.
  and Slagboom, P. Eline and van Ommen, G. J. B. and Wijmenga, Cisca and et
  al.},
editor={Payseur, Bret A.Editor},
year={2013},
month={Feb},
pages={e1003301}
}

@article{Hilbers_2013,
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title={Exome Sequencing of Germline DNA from Non-BRCA1/2 Familial Breast Cancer
  Cases Selected on the Basis of aCGH Tumor Profiling},
volume={8},
ISSN={1932-6203},
url={http://dx.doi.org/10.1371/journal.pone.0055734},
DOI={10.1371/journal.pone.0055734},
number={1},
journal={PLoS ONE},
publisher={Public Library of Science (PLoS)},
author={Hilbers, Florentine S. and Meijers, Caro M. and Laros, Jeroen F. J. and
  van Galen, Michiel and Hoogerbrugge, Nicoline and Vasen, Hans F. A. and
  Nederlof, Petra M. and Wijnen, Juul T. and van Asperen, Christi J. and
  Devilee, Peter},
editor={Peterlongo, PaoloEditor},
year={2013},
month={Jan},
pages={e55734}
}
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@article{Vis_2015,
keywords = {jlaros},
title={An efficient algorithm for the extraction of HGVS variant descriptions from sequences.},
author={Vis, J.K. and Vermaat, M and Taschner, P.E.M. and Kok, J.N. and Laros, J.F.J.},
journal={Bioinformatics},
year={2015},
month={Jul}
}

@article{van_Leeuwen_2015,
keywords={consortium},
title={Population-specific genotype imputations using minimac or IMPUTE2}, volume={10}, ISSN={1750-2799}, url={http://dx.doi.org/10.1038/nprot.2015.077}, DOI={10.1038/nprot.2015.077}, number={9}, journal={Nature Protocols}, publisher={Nature Publishing Group}, author={van Leeuwen, Elisabeth M and Kanterakis, Alexandros and Deelen, Patrick and Kattenberg, Mathijs V and Abdellaoui, Abdel and Hofman, Albert and Schönhuth, Alexander and Kanterakis, Alexandros and Menelaou, Androniki and de Craen, Anton J M and et al.}, year={2015}, month={Jul}, pages={1285–1296}}

@article{Kloosterman_2015,
keywords={consortium},
title={Characteristics of de novo structural changes in the human genome}, volume={25}, ISSN={1549-5469}, url={http://dx.doi.org/10.1101/gr.185041.114}, DOI={10.1101/gr.185041.114}, number={6}, journal={Genome Res.}, publisher={Cold Spring Harbor Laboratory Press}, author={Kloosterman, Wigard P. and Francioli, Laurent C. and Hormozdiari, Fereydoun and Marschall, Tobias and Hehir-Kwa, Jayne Y. and Abdellaoui, Abdel and Lameijer, Eric-Wubbo and Moed, Matthijs H. and Koval, Vyacheslav and Renkens, Ivo and et al.}, year={2015}, month={Apr}, pages={792–801}}

@article{Yoshihara_2015,
keywords={consortium},
title={Discovery of Molecular Markers to Discriminate Corneal Endothelial Cells in the Human Body}, volume={10}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0117581}, DOI={10.1371/journal.pone.0117581}, number={3}, journal={PLoS ONE}, publisher={Public Library of Science (PLoS)}, author={Yoshihara, Masahito and Ohmiya, Hiroko and Hara, Susumu and Kawasaki, Satoshi and Hayashizaki, Yoshihide and Itoh, Masayoshi and Kawaji, Hideya and Tsujikawa, Motokazu and Nishida, Kohji}, editor={Kerkis, IrinaEditor}, year={2015}, month={Mar}, pages={e0117581}}

@article{Pulyakhina_2015,
keywords = {jlaros},
title={SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing}, volume={43}, ISSN={1362-4962}, url={http://dx.doi.org/10.1093/nar/gkv242}, DOI={10.1093/nar/gkv242}, number={12}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Pulyakhina, Irina and Gazzoli, Isabella and ’t Hoen, Peter A.C. and Verwey, Nisha and den Dunnen, Johan and Aartsma-Rus, Annemieke and Laros, Jeroen F.J.}, year={2015}, month={Mar}, pages={e80–e80}}

@article{van_Leeuwen_2015,
keywords={consortium},
title={Genome of the Netherlands population-specific imputations identify an ABCA6 variant associated with cholesterol levels}, volume={6}, ISSN={2041-1723}, url={http://dx.doi.org/10.1038/ncomms7065}, DOI={10.1038/ncomms7065}, journal={Nat Comms}, publisher={Nature Publishing Group}, author={van Leeuwen, Elisabeth M. and Karssen, Lennart C. and Deelen, Joris and Isaacs, Aaron and Medina-Gomez, Carolina and Mbarek, Hamdi and Kanterakis, Alexandros and Trompet, Stella and Postmus, Iris and Verweij, Niek and et al.}, year={2015}, month={Mar}, pages={6065}}
@misc{backtranslate,
keywords={software},
title={BackTranslate: Functions for reverse translation.},
author={J.F.J. Laros},
url={https://pypi.python.org/pypi/backtranslate},
year={2015}
}

@misc{barcode,
keywords={software},
title={barcode: Design NGS barcodes.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/barcode},
year={2013}
}

@misc{binparser,
keywords={software},
title={BinParser: General binary file parser.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/bin-parser},
year={2015}
}

@misc{famparser,
keywords={software},
title={FamParser: FAM file parser.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/fam-parser},
year={2015}
}

@misc{fastools,
keywords={software},
title={Fastools: FASTA/FASTQ analysis and manipulation toolkit.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/fastools},
year={2014}
}

@misc{kpal,
keywords={software},
title={kPal: k-mer analysis toolkit and programming library.},
author={Vermaat, M. and Laros, J.F.J.},
url={https://pypi.python.org/pypi/kPAL},
year={2014}
}

@misc{memoise,
keywords={software},
title={Memoise decorator.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/memoise},
year={2013}
}

@misc{onlinearray,
keywords={software},
title={An array-like object that calls a function.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/online-array},
year={2014}
}

@misc{piletools,
keywords={software},
title={Piletools: Mpileup analysis toolkit.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/piletools},
year={2015}
}

@misc{simreads,
keywords={software},
title={Generate simulated reads.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/sim-reads},
year={2015}
}

@misc{tracwiki,
keywords={software},
title={TracWiki: Checkout and commit trac wiki pages.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/tracwiki},
year={2012}
}

@misc{tssv,
keywords={software},
title={TSSV: Targeted characterisation of short structural variation.},
author={Laros, J.F.J.},
url={https://pypi.python.org/pypi/tssv},
year={2014}
}

@misc{mutalyzer,
keywords={software},
title={Mutalyzer: Sequence variant nomenclature checking according to the
guidelines of the Human Genome Variation Society.},
author={Vermaat, M. and Vis, J.K. and Schaafsma, G.C.P. and Stouten, G.R. and Laros, J.F.J.},
url={},
year={2015}
}

@misc{extractor,
keywords={software},
title={HGVS variant description extractor.},
author={Vis, J.K. and Vermaat, M. and Laros, J.F.J.},
url={https://github.com/mutalyzer/description-extractor},
year={2015}
}

@misc{snp,
keywords={software},
title={Finding non-binary SNP candidates.},
author={Laros, J.F.J.},
url={https://github.com/jfjlaros/snp},
year={2015}
}