- Can we use multiple recalibration files on the fly?
- If so, compare to the 'polished BAM' method.
QC:
- BAM statistics.
- Concordance with both array data and hg19-VCFs.
GoNL spec
- GoNL spec will be freezed by Thursday. -
- QUAL in VCF? New QUAL introduced by GATK.
## eLAN
Resolved.
...
...
@@ -33,8 +23,9 @@ PN, MS, GV, Paul van Dijk had a hands-on session.
- PN wanted to have a test/acc instance of IDP at Groningen for testing.
## Ansible and Easybuild integration
Ansible installation testing:
- GV succeeded installing easybuild via ansible on Shark.
- Gerben fixed the Molgenis-compute evn. Currently deployed at the home dir of Gerben. GV will deploy the env at bbmri-nl share.
- Pieter is improving the ansible playbook (replacing wget in shell with native Ansible commands).
- Pieter brought up an Ansible issue he encountered. Work around now by sourcing (e.g., bashrc) in Ansible. Because login shells of Ansible are not interactive. MS will check PN's