Commit 6476a248 authored by Mei's avatar Mei
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Update notes_2017_07_18.md

parent c96caafc
......@@ -3,10 +3,9 @@ Present: Jonathan Vis (JV), Pieter Neerincx (PN), Roan Kanninga (RK),
Gerben van der Vries (GV), Leon Mei (LM), Peter van 't Hof (PH).
## GoNL re-analysis
- LM: majority of differences caused by chunking; now disabled; still not 100%.
- LM: minor differences in the Java (8) version.
- LM: majority of differences caused by chunking; After disabled it, still not 100% between biopet and molgenis-compute. Could be caused by minor differences in the Java (8) version.
- LM: Test the difference on the Genome-in-a-Bottle sample.
- LM: Chunking is a trade off between accuracy and computational resources.
- LM: Chunking is a trade off between "accuracy" and computational resources.
- PN: BWA output depends on the number of cores used.
- LM: Will test the quality of the NoC on the GIAB sample.
- PN: proposes a regular benchmark for bioinformatics across institutes.
......@@ -31,7 +30,7 @@ Resolved.
deploy the BIOS pipeline on the same system.
- PN: polishing the ansible together with GV.
- PN: federated ID is lacking on the EGI cluster.
- LM: Meeting planned on August 11th.
- LM: Meeting planned on August 11th with Imaging people to clarify their next steps here.
## Other
None.
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