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notes/wd/notes_2017_07_18.md

+# Work discussion 18-07-2017
+Present: Jonathan Vis (JV), Pieter Neerincx (PN), Roan Kanninga (RK),
+Gerben van der Vries (GV), Leon Mei (LM), Peter van 't Hof (PH).
+
+## GoNL re-analysis
+- LM: majority of differences caused by chunking; now disabled; still not 100%.
+- LM: minor differences in the Java (8) version.
+- LM: Test the difference on the Genome-in-a-Bottle sample.
+- LM: Chunking is a trade off between accuracy and computational resources.
+- PN: BWA output depends on the number of cores used.
+- LM: Will test the quality of the NoC on the GIAB sample.
+- PN: proposes a regular benchmark for bioinformatics across institutes.
+- LN: will plan a meeting (with external parties) to discuss the lessons
+  learned.
+- PH: > 190 trios analysed; within two weeks all the samples should be ready.
+- PN: assessment of the QC needs to be performed; array data needs to be lifted
+  over from build 36.
+- LM: makes a proposal for the QC.
+
+## eLAN
+Resolved.
+
+## CoManage
+- PN: No updates, will have a meeting on thursday with two admins; there seems
+  to be some activity at Surf.
+
+## Ansible and Easybuild integration
+- EGI competence centre: robustly deploying software was difficult, there seems
+  to be some movement there. Today they get a couple of VMs to test a virtual
+  SLURM cluster, the BBMRI environment will be deployed there. LM wants to
+  deploy the BIOS pipeline on the same system.
+- PN: polishing the ansible together with GV.
+- PN: federated ID is lacking on the EGI cluster.
+- LM: Meeting planned on August 11th.
+
+## Other
+None.
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