Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
B
bbmri2
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Issues
0
Issues
0
List
Boards
Labels
Service Desk
Milestones
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Operations
Operations
Incidents
Environments
Analytics
Analytics
CI / CD
Repository
Value Stream
Wiki
Wiki
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
Laros
bbmri2
Commits
5640f699
Commit
5640f699
authored
Jul 18, 2017
by
jkvis
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
Add new file
parent
b37f2475
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
37 additions
and
0 deletions
+37
-0
notes/wd/notes_2017_07_18.md
notes/wd/notes_2017_07_18.md
+37
-0
No files found.
notes/wd/notes_2017_07_18.md
0 → 100644
View file @
5640f699
# Work discussion 18-07-2017
Present: Jonathan Vis (JV), Pieter Neerincx (PN), Roan Kanninga (RK),
Gerben van der Vries (GV), Leon Mei (LM), Peter van 't Hof (PH).
## GoNL re-analysis
-
LM: majority of differences caused by chunking; now disabled; still not 100%.
-
LM: minor differences in the Java (8) version.
-
LM: Test the difference on the Genome-in-a-Bottle sample.
-
LM: Chunking is a trade off between accuracy and computational resources.
-
PN: BWA output depends on the number of cores used.
-
LM: Will test the quality of the NoC on the GIAB sample.
-
PN: proposes a regular benchmark for bioinformatics across institutes.
-
LN: will plan a meeting (with external parties) to discuss the lessons
learned.
-
PH: > 190 trios analysed; within two weeks all the samples should be ready.
-
PN: assessment of the QC needs to be performed; array data needs to be lifted
over from build 36.
-
LM: makes a proposal for the QC.
## eLAN
Resolved.
## CoManage
-
PN: No updates, will have a meeting on thursday with two admins; there seems
to be some activity at Surf.
## Ansible and Easybuild integration
-
EGI competence centre: robustly deploying software was difficult, there seems
to be some movement there. Today they get a couple of VMs to test a virtual
SLURM cluster, the BBMRI environment will be deployed there. LM wants to
deploy the BIOS pipeline on the same system.
-
PN: polishing the ansible together with GV.
-
PN: federated ID is lacking on the EGI cluster.
-
LM: Meeting planned on August 11th.
## Other
None.
\ No newline at end of file
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment