Update notes_2017_06_20.md

notes/wd/notes_2017_06_06.md

-# Work discussion 06-06-2017
-
-Present: Jonathan Vis (JV), Jeroen Laros (JL),
-Rowan Kanninga (RK), Leon Mei (LM), Mark Santcroos (MS).
-
-## GoNL re-analysis
-- Issues with pipeline settings, have been resolved now.
-- Documenting the actual versions of the tools that are used; the
-  headers/footers (backend specific code) are obscuring the logic.
-- Testing on chr Y (genome in a bottle).
-- Re-run GIAB sample (started).
-- No X11 on shark for QC output (LM looks it to this).
-
-## eLAN
-Resolved.
-
-## CoManage
-- MS: waiting on Surf for the implementation of a secure transport mechanism.
-- PN: what about robustness; no concerns at the moment.
-- MS: Leiden does not have a test IDP.
-- MS: will ask Surf about progress.
-- JL: do we need a test IDP? PN: likes to see the integration with surf connext;
-  MS: IDP will not be the main issue, the workflow is the main issue.
-- PN likes to have a roadmap from Surf; (JL and) PN will draft an e-mail.
-
-## Ansible and Easybuild integration
-- PN made an idempotent playbook, checking handlers now; progress is slow.
-- PN playbook is ok, but could be improved upon.
-- Playbook is on GitHub: https://github.com/bbmri-nl/bbmri-nl-pipeline-deployment.

notes/wd/notes_2017_06_20.md

+# Work discussion 20-06-2017
+
+Present: Jonathan Vis (JV), Jeroen Laros (JL), Pieter Neerincx,
+Roan Kanninga (RK), Gerben van der Vries GV, Leon Mei (LM),
+Mark Santcroos (MS).
+
+## GoNL re-analysis
+- Test runs on different clusters using different frameworks.
+  - Discrepancies in the results, mainly related to read groups.
+  - Cause seem to be the sample sheet, conversion to Molgenis format failed.
+- LM proposes to move on with the analysis, dropping the Molgenis framework.
+- JL proposes to start with BioPet, giving Groningen the time to fix the
+  problems. Once everything is working, the Groningen pipeline can be used as
+  well.
+- RK and GV will review the dry-run logs of BioPet. LM will also give a log of
+  a real run.
+- No X11 on shark for QC output (LM looks in to this).
+
+## eLAN
+Resolved.
+
+## CoManage
+- MS: TLS is reported to be working.
+- MS: LDAPS functionality will be offered.
+- PN asked about the roadmap from Surf, Irene asked about extra funding. We
+  agree that apart from the POC, the funding should come from NFU / SURF.
+
+## Ansible and Easybuild integration
+- PN: Improvement of the playbook is still on the list. No updates because of
+  all the work on GoNL.
+- Playbook is on GitHub: https://github.com/bbmri-nl/bbmri-nl-pipeline-deployment.
+
+## Other
+- On 23-06-2017 there will be a hands on session on Easybuild / Ansible.
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