1. 09 Sep, 2021 1 commit
    • van den Berg's avatar
      Increase the maximum number of junction reads · a381c61f
      van den Berg authored
      Fusioncatcher crashes if the maximum number of junction reads is
      exceeded. This commit adds a parameter to the fusioncatcher rule to
      make this configurable, and also increases the default limit from 100000
      to 150000.
      a381c61f
  2. 27 Nov, 2020 1 commit
    • van den Berg's avatar
      Update jinja template to use floats instead of int · c620561d
      van den Berg authored
      This fixes a crash in the generation of the pdf report when there is
      expression of the MECOM gene. If there is MECOM expression, the read
      counts are actually floats, not integers, which leads to a crash.
      c620561d
  3. 29 Oct, 2020 1 commit
  4. 25 Jun, 2020 2 commits
  5. 24 Jun, 2020 2 commits
  6. 23 Jun, 2020 2 commits
  7. 12 Jun, 2020 1 commit
  8. 03 Jun, 2020 3 commits
    • van den Berg's avatar
      Add test for RUNX1 insertion · b77977e1
      van den Berg authored
      This tests the fix for #issue-11, which was resolved by a new upstream release
      of the gmap aligner. The same upstream release also fixes #issue-12.
      b77977e1
    • van den Berg's avatar
      Add tests data for duplication in RUNX1 · 3610caf9
      van den Berg authored
      3610caf9
    • van den Berg's avatar
      Upgrade gsnap to version 20.06.01 · 734b19b1
      van den Berg authored
       - Upgrade pytest-workflow to version 1.4.0, which adds support for
         contains_regex.
       - Update test cases to match the values produced by the new version of gsnap.
         Use contains_regex to reduce the sensitivity of the test cases to small
         changes in values.
       - Change the MV4-11 FLT3 hotspot mutation test to a different variant. The
         previous variant was in a hard to map region, so it is unclear if it is an
         error when it could not be found.
      734b19b1
  9. 18 May, 2020 1 commit
  10. 14 May, 2020 1 commit
  11. 13 May, 2020 2 commits
  12. 12 May, 2020 1 commit
  13. 06 May, 2020 1 commit
  14. 29 Apr, 2020 5 commits
  15. 28 Apr, 2020 1 commit
  16. 23 Apr, 2020 1 commit
  17. 17 Apr, 2020 1 commit
  18. 01 Apr, 2020 3 commits
  19. 30 Mar, 2020 2 commits
  20. 26 Mar, 2020 1 commit
  21. 25 Mar, 2020 4 commits
  22. 24 Mar, 2020 2 commits
  23. 19 Mar, 2020 1 commit