1. 02 Nov, 2021 1 commit
  2. 01 Nov, 2021 3 commits
  3. 05 Oct, 2021 3 commits
  4. 09 Sep, 2021 1 commit
    • van den Berg's avatar
      Increase the maximum number of junction reads · a381c61f
      van den Berg authored
      Fusioncatcher crashes if the maximum number of junction reads is
      exceeded. This commit adds a parameter to the fusioncatcher rule to
      make this configurable, and also increases the default limit from 100000
      to 150000.
      a381c61f
  5. 11 Aug, 2021 1 commit
  6. 07 Jun, 2021 2 commits
  7. 11 May, 2021 15 commits
  8. 09 Mar, 2021 1 commit
  9. 27 Nov, 2020 1 commit
    • van den Berg's avatar
      Update jinja template to use floats instead of int · c620561d
      van den Berg authored
      This fixes a crash in the generation of the pdf report when there is
      expression of the MECOM gene. If there is MECOM expression, the read
      counts are actually floats, not integers, which leads to a crash.
      c620561d
  10. 23 Nov, 2020 1 commit
  11. 29 Oct, 2020 1 commit
  12. 04 Aug, 2020 2 commits
    • van den Berg's avatar
      Close quote in Readme · f69efaa1
      van den Berg authored
      f69efaa1
    • van den Berg's avatar
      Extend the Readme · 4cab884b
      van den Berg authored
      Add explanation on how to run the pipeline and the importance of using
      the --use-singularity flag.
      
      Add an example on manually running one of the test cases.
      
      Add an explanation on the different branches and how to use them.
      4cab884b
  13. 29 Jul, 2020 3 commits
  14. 27 Jul, 2020 1 commit
    • van den Berg's avatar
      Add github link to readme, and remove graph · a172279a
      van den Berg authored
      Since external users cannot submit issues or pull requests without an
      account for the LUMC gitlab instance, we should refer them to the public
      github instance of HAMLET.
      
      The pipeline graph doesn't add a lot of information, and it doesn't
      render on github, so it was removed.
      a172279a
  15. 01 Jul, 2020 1 commit
  16. 25 Jun, 2020 2 commits
  17. 24 Jun, 2020 1 commit