Commit e283f481 authored by van den Berg's avatar van den Berg
Browse files

Update GSNAP aligner to latest version.

The previous version that was used would get stuck on certain input fastq.gz
files and the process would never exit. This appears to be fixed in the latest
version of GSNAP.
parent 0ff96dcc
......@@ -8,7 +8,7 @@ localrules: table_vars_all, table_vars_hi
containers = {
"bedtools-2.27-grep-2.14-gawk-5.0-click-7-python-3.7": "docker://",
"debian": "docker://debian:buster-slim",
"gsnap": "docker://",
"gsnap": "docker://",
"hamlet-scripts": "docker://lumc/hamlet-scripts:0.2",
"picard": "docker://",
"python3": "docker://python:3.7.4-slim-stretch",
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