Commit e26a10e4 authored by van den Berg's avatar van den Berg
Browse files

Add conda env to fusioncatcher

parent 60d88d49
...@@ -64,6 +64,7 @@ if do_fusioncatcher: ...@@ -64,6 +64,7 @@ if do_fusioncatcher:
dir=RUN.output("{sample}/fusion/fusioncatcher"), dir=RUN.output("{sample}/fusion/fusioncatcher"),
txt=RUN.output("{sample}/fusion/fusioncatcher/final-list_candidate-fusion-genes.txt") txt=RUN.output("{sample}/fusion/fusioncatcher/final-list_candidate-fusion-genes.txt")
threads: 8 threads: 8
conda: srcdir("envs/fusioncatcher.yml")
shell: shell:
"(rm -rf {output.dir}" "(rm -rf {output.dir}"
" && {input.exe} --threads {threads} -i {input.fq1},{input.fq2} -o {output.dir})" " && {input.exe} --threads {threads} -i {input.fq1},{input.fq2} -o {output.dir})"
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