Commit d6312711 authored by bow's avatar bow
Browse files

Add conda env to report creation rule

parent fe46da99
...@@ -153,6 +153,7 @@ rule create_report: ...@@ -153,6 +153,7 @@ rule create_report:
scr=srcdir("scripts/generate_report.py"), scr=srcdir("scripts/generate_report.py"),
output: output:
pdf=RUN.output(OUTPUTS["report"]), pdf=RUN.output(OUTPUTS["report"]),
conda: srcdir("envs/create_report.yml")
shell: shell:
"python {input.scr}" "python {input.scr}"
" --templates-dir {input.templates} --imgs-dir {input.imgs}" " --templates-dir {input.templates} --imgs-dir {input.imgs}"
......
channels:
- bioconda
- r
- defaults
- conda-forge
dependencies:
- wkhtmltopdf=0.12.3=0
- pip=9.0.3=py36_0
- python=3.6.5=hc3d631a_0
- readline=7.0=ha6073c6_4
- setuptools=39.0.1=py36_0
- pip:
- click==6.7
- gitdb2==2.0.3
- gitpython==2.1.9
- jinja2==2.10
- markupsafe==1.0
- pdfkit==0.6.1
- smmap2==2.0.3
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