Commit cd589779 authored by van den Berg's avatar van den Berg
Browse files

Fix various bug relate to empty data/results

Some tools crash when they receive empty input files (such as when 0
variants are found). The updated biocontainer images contain a newer
version of the crimson library to gracefully handle these cases.
parent 184a45a9
Pipeline #6701 failed with stages
......@@ -14,7 +14,7 @@ include: "includes/itd/Snakefile"
localrules: create_summary, generate_report, package_results
containers = {
"fsnviz": "docker://quay.io/biocontainers/fsnviz:0.3.0--py_3",
"fsnviz": "docker://quay.io/biocontainers/fsnviz:0.3.0--pyhdfd78af_5",
"hamlet-scripts": "docker://lumc/hamlet-scripts:0.3",
"debian": "docker://debian:buster-slim",
"zip": "docker://lumc/zip:3.0"
......
......@@ -9,7 +9,7 @@ localrules: combine_plots, fusioncatcher_cp, intersect_fusions, plot_cp, plot_is
containers = {
"debian": "docker://debian:buster-slim",
"fsnviz": "docker://quay.io/biocontainers/fsnviz:0.3.0--py_4",
"fuma": "docker://quay.io/biocontainers/fuma:3.0.5--py27h24bf2e0_1",
"fuma": "docker://quay.io/biocontainers/fuma:4.0.0--pyhb7b1952_0",
"fusioncatcher": "docker://quay.io/biocontainers/fusioncatcher:1.20--2",
"star-fusion": "docker://quay.io/biocontainers/star-fusion:1.6.0--1",
"hamlet-scripts": "docker://lumc/hamlet-scripts:0.2"
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment