Merge pull request #14 from LUMC/issue-12

Fix #12 - SingularityCE version not recognised

test/test_expression.yml

@@ -49,8 +49,8 @@
   command: >
     singularity --version
   stdout:
-    contains:
-      - "singularity version 3"
+    contains_regex:
+      - "singularity(-ce)? version 3"
 
 - name: test-expression-integration-HEL
   tags:

test/test_fusion.yml

@@ -75,8 +75,8 @@
   command: >
     singularity --version
   stdout:
-    contains:
-      - "singularity version 3"
+    contains_regex:
+      - "singularity(-ce)? version 3"
 
 - name: test-fusion-integration-NB-4-dry-run
   tags:

test/test_hamlet.yml

@@ -47,8 +47,8 @@
   command: >
     singularity --version
   stdout:
-    contains:
-      - "singularity version 3"
+    contains_regex:
+      - "singularity(-ce)? version 3"
 
 - name: test-hamlet-frankenstein-integration
   tags:

test/test_itd.yml

@@ -53,8 +53,8 @@
   command: >
     singularity --version
   stdout:
-    contains:
-      - "singularity version 3"
+    contains_regex:
+      - "singularity(-ce)? version 3"
 
 - name: test-itd-MV4-11-flt3
   tags:

test/test_qc_seq.yml

@@ -29,8 +29,8 @@
   command: >
     singularity --version
   stdout:
-    contains:
-      - "singularity version 3"
+    contains_regex:
+      - "singularity(-ce)? version 3"
 
 - name: test-qc-single
   tags:

test/test_snv_indels.yml

@@ -43,8 +43,8 @@
   command: >
     singularity --version
   stdout:
-    contains:
-      - "singularity version 3"
+    contains_regex:
+      - "singularity(-ce)? version 3"
 
 - name: test-p53-integration-NB-4
   tags: