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hamlet
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6d2083b0
Commit
6d2083b0
authored
Jul 29, 2020
by
van den Berg
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Update NB4 rna stats for latest version of gmap
parent
8a1acd6b
Pipeline
#3993
passed with stages
in 44 minutes and 55 seconds
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test/test_snv_indels.yml
test/test_snv_indels.yml
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test/test_snv_indels.yml
View file @
6d2083b0
...
...
@@ -95,7 +95,7 @@
contains
:
-
"
PF_BASES
\t
PF_ALIGNED_BASES
\t
RIBOSOMAL_BASES
\t
CODING_BASES
\t
UTR_BASES
\t
INTRONIC_BASES
\t
INTERGENIC_BASES
\t
IGNORED_READS
\t
CORRECT_STRAND_READS
\t
INCORRECT_STRAND_READS
\t
NUM_R1_TRANSCRIPT_STRAND_READS
\t
NUM_R2_TRANSCRIPT_STRAND_READS
\t
NUM_UNEXPLAINED_READS"
contains_regex
:
-
'
1320386\t1
[2,3]\d{5}\t0\t5\d{5}\t68\d{4}\t4[6,7]\d{3}\t37\d\t0\t0\t0\t2[7,8]\d{2}\t31\d{2}\t[8,9]\d
'
-
'
1320386\t1
2[8,9]\d{4}\t0\t56\d{4}\t68\d{4}\t4[6,7]\d{3}\t(49|50)\d\t0\t0\t0\t2[7,8]\d{2}\t31\d{2}\t89
'
-
path
:
"
NB4/snv-indels/NB4.variants_hi.csv"
contains
:
...
...
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