Commit 60d88d49 authored by van den Berg's avatar van den Berg
Browse files

Rename report output since it is a reserved key

parent e44137f1
......@@ -49,7 +49,7 @@ OUTPUTS = dict(
# Merged FASTQs, stats, and packaged results
fqs="{sample}/{sample}-{pair}.fq.gz",
summary="{sample}/{sample}.summary.json",
report="{sample}/hamlet_report.{sample}.pdf",
reportje="{sample}/hamlet_report.{sample}.pdf",
package="{sample}/hamlet_results.{sample}.zip",
# Small variants
......@@ -157,7 +157,7 @@ rule generate_report:
toc=srcdir("report/assets/toc.xsl"),
scr=srcdir("scripts/generate_report.py"),
output:
pdf=RUN.output(OUTPUTS["report"]),
pdf=RUN.output(OUTPUTS["reportje"]),
conda: srcdir("envs/create_report.yml")
shell:
"python {input.scr}"
......@@ -184,7 +184,7 @@ rule package_results:
kmt_csv=RUN.output(OUTPUTS["kmt2a_csv"]),
kmt_bg_csv=RUN.output(OUTPUTS["kmt2a_bg_csv"]),
kmt_png=RUN.output(OUTPUTS["kmt2a_png"]),
report=RUN.output(OUTPUTS["report"]),
reportje=RUN.output(OUTPUTS["reportje"]),
output:
pkg=RUN.output(OUTPUTS["package"]),
params:
......
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