Commit 5e4d6371 authored by van den Berg's avatar van den Berg
Browse files

Move all custom docker images to quay.io

Docker hub has started to remove unused images from free accounts, which
means that it might remove images used by this pipeline without notice.
Therefore the pipeline now exclusively uses images from quay.io or
official repositories from docker hub, which do not have this
limitation.
parent f69efaa1
Pipeline #5881 failed with stages
......@@ -14,9 +14,9 @@ localrules: create_summary, generate_report, package_results
containers = {
"fsnviz": "docker://quay.io/biocontainers/fsnviz:0.3.0--py_3",
"hamlet-scripts": "docker://lumc/hamlet-scripts:0.3",
"hamlet-scripts": "docker://quay.io/redmar_van_den_berg/hamlet-scripts:0.3",
"debian": "docker://debian:buster-slim",
"zip": "docker://lumc/zip:3.0"
"zip": "docker://quay.io/redmar_van_den_berg/zip:3.0"
}
settings=config["settings"]
......
......@@ -11,7 +11,7 @@ containers = {
"bedtools-2.17-python-2.7": "docker://quay.io/biocontainers/mulled-v2-a9ddcbd438a66450297b5e0b61ac390ee9bfdb61:e60f3cfda0dfcf4a72f2091c6fa1ebe5a5400220-0",
"htseq": "docker://quay.io/biocontainers/htseq:0.11.2--py27h637b7d7_1",
"picard": "docker://quay.io/biocontainers/picard:2.20.5--0",
"hamlet-scripts": "docker://lumc/hamlet-scripts:0.2"
"hamlet-scripts": "docker://quay.io/redmar_van_den_berg/hamlet-scripts:0.2"
}
settings=config["settings"]
......
......@@ -12,7 +12,7 @@ containers = {
"fuma": "docker://quay.io/biocontainers/fuma:3.0.5--py27h24bf2e0_1",
"fusioncatcher": "docker://quay.io/biocontainers/fusioncatcher:1.20--2",
"star-fusion": "docker://quay.io/biocontainers/star-fusion:1.6.0--1",
"hamlet-scripts": "docker://lumc/hamlet-scripts:0.2"
"hamlet-scripts": "docker://quay.io/redmar_van_den_berg/hamlet-scripts:0.2"
}
settings=config["settings"]
......
......@@ -4,7 +4,7 @@ from os import path
containers = {
"bwa-0.7.17-samtools-1.3.1-picard-2.9.2": "docker://quay.io/biocontainers/mulled-v2-1c6be8ad49e4dfe8ab70558e8fb200d7b2fd7509:5900b4e68c4051137fffd99165b00e98f810acae-0",
"rose": "docker://lumc/rose-dt:0.4"
"rose": "docker://quay.io/redmar_van_den_berg/rose-dt:0.4"
}
settings=config["settings"]
......
......@@ -2,7 +2,7 @@ from os import path
containers = {
"bwa-0.7.17-samtools-1.3.1-picard-2.9.2": "docker://quay.io/biocontainers/mulled-v2-1c6be8ad49e4dfe8ab70558e8fb200d7b2fd7509:5900b4e68c4051137fffd99165b00e98f810acae-0",
"rose": "docker://lumc/rose-dt:0.4"
"rose": "docker://quay.io/redmar_van_den_berg/rose-dt:0.4"
}
settings=config["settings"]
......
......@@ -9,7 +9,7 @@ containers = {
"bedtools-2.27-grep-2.14-gawk-5.0-click-7-python-3.7": "docker://quay.io/biocontainers/mulled-v2-a4b89e0b16b1d7db92e5a069e5c40405b3b53aab:98c4ac2f0e27869be58f6a4d8bb7ae3bc02a3a70-0",
"debian": "docker://debian:buster-slim",
"gsnap": "docker://quay.io/biocontainers/gmap:2020.06.30--pl526h2f06484_0",
"hamlet-scripts": "docker://lumc/hamlet-scripts:0.2",
"hamlet-scripts": "docker://quay.io/redmar_van_den_berg/hamlet-scripts:0.2",
"picard": "docker://quay.io/biocontainers/picard:2.20.5--0",
"python3": "docker://python:3.7.4-slim-stretch",
"samtools": "docker://quay.io/biocontainers/samtools:1.6--h244ad75_4",
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment