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hem
hamlet
Commits
23e1edeb
Commit
23e1edeb
authored
May 08, 2018
by
bow
Browse files
Add fusion svg to summary rule requirement
parent
d6312711
Changes
1
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23e1edeb
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@@ -119,6 +119,9 @@ rule create_summary:
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@@ -119,6 +119,9 @@ rule create_summary:
idm=RUN.settings["ref_id_mapping"],
idm=RUN.settings["ref_id_mapping"],
var_plot_dir=RUN.output(OUTPUTS["smallvars_plots_dir"]),
var_plot_dir=RUN.output(OUTPUTS["smallvars_plots_dir"]),
fusion_results_dir=RUN.output(OUTPUTS["fusion_results_dir"]),
fusion_results_dir=RUN.output(OUTPUTS["fusion_results_dir"]),
# This is actually a proxy so that the PNGs are there when create_summary runs;
# Because of problems in wkhtmltopdf, we can only show PNG images.
fusions_svg=RUN.output(OUTPUTS["fusions_svg"]),
flt3_plot=RUN.output(OUTPUTS["flt3_png"]),
flt3_plot=RUN.output(OUTPUTS["flt3_png"]),
kmt2a_plot=RUN.output(OUTPUTS["kmt2a_png"]),
kmt2a_plot=RUN.output(OUTPUTS["kmt2a_png"]),
exon_ratios=RUN.output(OUTPUTS["ratio_exons"]),
exon_ratios=RUN.output(OUTPUTS["ratio_exons"]),
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