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  • van den Berg's avatar
    Add conda env for fusioncatcher · 60dfb09e
    van den Berg authored
    Switch to version 1.00 of fusioncatcher, which is available from conda
    like most other tools. Remove the fusioncatcher_exe entry from
    config-base.yml, and update the Snakefile to use fusioncatcher from
    conda.
    
    As a side effect, all optional parts of the pipeline which depend on the
    availability can now be executed by default.
    
    README.md has been updated to reflect these changes
    60dfb09e