Colibri on API Infra

This milestone keeps track tasks required for deploying Colibri (referred from here as the capture-lumc) on our API infrastructure.

In addition to the tasks listed here, this milestone also depends on the version 0.1.0 release of Amegilla.

All issues for this milestone are closed. You may close the milestone now.

Unstarted Issues (open and unassigned)

Ongoing Issues (open and assigned)

Completed Issues (closed)

hutspot · Look into using picard metrics in stead of calculating our own mapping statistics
#19
hutspot · Additional QC.
#16
hutspot · Code review.
#15
hutspot · Scattering queue vs. snakemake concordance test.
#14
hutspot · X.509 pipeline
#13
hutspot · Connection transfer -> cerana.
#12
hutspot · QC-db metadata structure.
#11
hutspot · Handle cases without any regions of interest
#10
hutspot · Pipeline configuration file in stead of --config values
#9
hutspot · Add refflat coverage in pipeline
#8
hutspot · Create stats.tsv from stats.json
#4
hutspot · Copy .bai to .bam.bai
#3