Human Genetics issueshttps://git.lumc.nl/groups/humgen/-/issues2018-04-30T22:53:32+02:00https://git.lumc.nl/humgen/cookiecutter-data-analysis/-/issues/1Add notes about initial git config and GitLab ssh key set up2018-04-30T22:53:32+02:00Mihai LefterAdd notes about initial git config and GitLab ssh key set upInitial git config:
- git config --global user.email "your_email@example.com"
- git config user.name "your_name"
SSH key:
- find the key generation steps [here](https://git.lumc.nl/help/ssh/README).
- add key to GitLab on the profile se...Initial git config:
- git config --global user.email "your_email@example.com"
- git config user.name "your_name"
SSH key:
- find the key generation steps [here](https://git.lumc.nl/help/ssh/README).
- add key to GitLab on the profile settings _SSH keys_ page.Mihai LefterMihai Lefterhttps://git.lumc.nl/humgen/infrastructure/-/issues/3IPython notebook pages could not be rendered in Chrome.2018-04-30T22:53:32+02:00bowIPython notebook pages could not be rendered in Chrome.IPython notebook displays in GitLab does not work in Chrome.
Example page: https://git.lumc.nl/sasc/project-025-neuro/blob/master/analysis/scripts/project-025-neuro.ipynb
It renders just fine in Firefox. In Chrome, instead of rende...IPython notebook displays in GitLab does not work in Chrome.
Example page: https://git.lumc.nl/sasc/project-025-neuro/blob/master/analysis/scripts/project-025-neuro.ipynb
It renders just fine in Firefox. In Chrome, instead of rendering the page, I get a page with the "He's dead Jim" message. When this happens, all my other tabs on any GitLab page suddenly show the same message as well (despite working just fine before loading the IPython page).
This is on Chrome 34.0.1847.137, the Firefox version is 29.0. Both were run on Ubuntu 12.04.https://git.lumc.nl/humgen/infrastructure/-/issues/2GitLab 500 internal server error2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nlGitLab 500 internal server errorThis pages shows a 500 internal server error:
https://git.lumc.nl/j.f.j.laros/ngs-data-analysis-course/commit/39a47984b243b1d663d63b3b290a954522ca1953
Reported by Jeroen Laros.This pages shows a 500 internal server error:
https://git.lumc.nl/j.f.j.laros/ngs-data-analysis-course/commit/39a47984b243b1d663d63b3b290a954522ca1953
Reported by Jeroen Laros.https://git.lumc.nl/humgen/infrastructure/-/issues/1Use this repository?2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nlUse this repository?I setup this repository quite a while ago to store some server config related files. Perhaps we should actually use it for more of our server configs. For example, Ansible playbooks etcetera?I setup this repository quite a while ago to store some server config related files. Perhaps we should actually use it for more of our server configs. For example, Ansible playbooks etcetera?https://git.lumc.nl/humgen/cli-mate/-/issues/6save rdf button should use a popup window for feedback.2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nlsave rdf button should use a popup window for feedback.(by ztatum)(by ztatum)Zuotian TatumZuotian Tatumhttps://git.lumc.nl/humgen/cli-mate/-/issues/5investigate django forms2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nlinvestigate django formsThe define form is written in jinja, and uses many custom macros and custom defined Field class. It also contains multi-row dataset. Initial investigation shows that this is a hard task, and may take more than a week to finish. However, ...The define form is written in jinja, and uses many custom macros and custom defined Field class. It also contains multi-row dataset. Initial investigation shows that this is a hard task, and may take more than a week to finish. However, it is still worth looking because the current approach has maintainability issues.
(by ztatum)Zuotian TatumZuotian Tatumhttps://git.lumc.nl/humgen/cli-mate/-/issues/4move auto-complete format source to database2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nlmove auto-complete format source to databaseCurrently it is an array in define.js. We need to move it to the backend, and possibly changing the content based on target.
(by ztatum)Currently it is an array in define.js. We need to move it to the backend, and possibly changing the content based on target.
(by ztatum)Zuotian TatumZuotian Tatumhttps://git.lumc.nl/humgen/cli-mate/-/issues/3Consider refactoring DefinitionDesigner2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nlConsider refactoring DefinitionDesignerWith rdflib based libraries such rdfalchemy or surfrdf.
(by ztatum)With rdflib based libraries such rdfalchemy or surfrdf.
(by ztatum)Zuotian TatumZuotian Tatumhttps://git.lumc.nl/humgen/cli-mate/-/issues/2user registration2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nluser registrationshould use django auth login, logout, registration with custom templates.
(by ztatum)should use django auth login, logout, registration with custom templates.
(by ztatum)Zuotian TatumZuotian Tatumhttps://git.lumc.nl/humgen/cli-mate/-/issues/1core models should store file locations instead of file content2018-04-30T22:53:32+02:00Martijn Vermaatm.vermaat.hg@lumc.nlcore models should store file locations instead of file contentCurrently, tools, template are stored as a big string in the database. We should store the file location instead.
- change database schema
- change the file content retrieval code in define and generate pages.
- change admin interf...Currently, tools, template are stored as a big string in the database. We should store the file location instead.
- change database schema
- change the file content retrieval code in define and generate pages.
- change admin interface to show file content rather than file location.
(by ztatum)Zuotian TatumZuotian Tatum