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Sam Nooij / Automated bacterial assembly from PacBio HiFi
BSD 3-Clause "New" or "Revised" LicenseAutomated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.
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Mirrors / backtranslate
MIT LicenseUpdated -
Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.
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A collection of semi-reusable scripts, which are not part of any official toolchain
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De Coster / APqr Final
GNU General Public License v3.0 or laterUpdated -
Mirrors / mutalyzer
Creative Commons Attribution Share Alike 4.0 InternationalMirror of https://github.com/LUMC/mutalyzer.git
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Neuroscience / StandardizedDixonPipeline
Creative Commons Attribution Non Commercial Share Alike 4.0 InternationalUpdated -
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James Gallant / InfiniumBrowser
MIT LicenseUpdated