diff --git a/README.md b/README.md
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--- a/README.md
+++ b/README.md
@@ -33,6 +33,8 @@ The top-level directory contains slides for the following lessons.
4. [More Python Goodness](http://nbviewer.ipython.org/urls/raw.github.com/LUMC/programming-course/master/more-python.ipynb)
5. [Working with NumPy arrays](http://nbviewer.ipython.org/urls/raw.github.com/LUMC/programming-course/master/numpy.ipynb)
6. [Plotting with matplotlib](http://nbviewer.ipython.org/urls/raw.github.com/LUMC/programming-course/master/matplotlib.ipynb)
+7. [Object-oriented programming](http://nbviewer.ipython.org/urls/raw.github.com/LUMC/programming-course/master/classes.ipynb)
+8. [A sip of Biopython](http://nbviewer.ipython.org/urls/raw.github.com/LUMC/programming-course/master/biopython.ipynb)
Note: These links are to one-page renderings on [IPython Notebook Viewer](http://nbviewer.ipython.org/), see below how to get the real slideshows.
diff --git a/biopython.ipynb b/biopython.ipynb
new file mode 100644
index 0000000000000000000000000000000000000000..86d00246259fa97a6d6e7210ec7912bd6c8faf36
--- /dev/null
+++ b/biopython.ipynb
@@ -0,0 +1,1758 @@
+{
+ "metadata": {
+ "name": ""
+ },
+ "nbformat": 3,
+ "nbformat_minor": 0,
+ "worksheets": [
+ {
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "# A sip of Biopython\n",
+ "***\n",
+ "\n",
+ "[Wibowo Arindrarto](mailto:w.arindrarto@lumc.nl), [Jeroen Laros](mailto:j.f.j.laros@lumc.nl), [Zuotian Tatum](mailto:z.tatum@lumc.nl), [Martijn Vermaat](mailto:m.vermaat.hg@lumc.nl)\n",
+ "\n",
+ "[Department of Human Genetics, Leiden University Medical Center](http://humgen.nl)\n",
+ "\n",
+ "[Sequencing Analysis Support Core, Leiden University Medical Center](http://sasc.lumc.nl)\n",
+ "\n",
+ "License: [Creative Commons Attribution 3.0 License (CC-by)](http://creativecommons.org/licenses/by/3.0)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Table of contents\n",
+ "\n",
+ "1. [Prelude: Python packages and their installation](#packages)\n",
+ "2. [Biopython](#biopython)\n",
+ "3. [Working with sequences](#sequences)\n",
+ "4. [File I/O with Biopython](#files)\n",
+ "5. [Fetching from online resources: NCBI's Entrez](#entrez)\n",
+ "6. [Performing a remote BLAST search](#blast)\n",
+ "7. [Beyond Biopython](#beyond)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "<a id=\"packages\"></a>\n",
+ "## Prelude: Python packages and their installation\n",
+ "\n",
+ "### Python Package Index (PyPI)\n",
+ "\n",
+ "[The Python Package Index](https://pypi.python.org/) is *the* place to find 3rd-party Python libraries (and to upload your own too).\n",
+ "\n",
+ "Remember the `pip install biopython` (or `numpy`, etc). command you ran? That source package was stored in PyPI.\n",
+ "\n",
+ "Some of the Python packages developed at our department are also in there:\n",
+ "\n",
+ "- [kMer](https://pypi.python.org/pypi/kMer): Analysis toolkit and programming library for k-mer profiles.\n",
+ "- [TSSV](https://pypi.python.org/pypi/tssv): Targeted characterisation of short structural variation.\n",
+ "- [fastools](https://pypi.python.org/pypi/fastools): Various tools for the analysis and manipulation of FASTA/FASTQ files.\n",
+ "- [piletools](https://pypi.python.org/pypi/piletools): Various tools for the analysis of mpileup files.\n",
+ "- [barcode](https://pypi.python.org/pypi/barcode): For designing NGS barcodes.\n",
+ "- [wiggelen](http://wiggelen.readthedocs.org/): Working with Wiggle (WIG) tracks.\n",
+ "- [monoseq](https://monoseq.readthedocs.org/): Pretty-printing of DNA and protein sequences.\n",
+ "\n",
+ "For example, to install our k-mer profile toolkit:\n",
+ "\n",
+ " pip install kMer"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Python virtual environments\n",
+ "\n",
+ "[`virtualenv`](http://www.virtualenv.org/) (with its frontend [`virtualenvwrapper`](http://virtualenvwrapper.readthedocs.org/)) is a tool for managing isolated Python environments. Its benefits are:\n",
+ "\n",
+ "1. You can have specific versions of packages installed, per environment.\n",
+ "2. You can install packages as non-root user.\n",
+ "\n",
+ "We list some commands to manage your virtual environments. First, creating a new one:\n",
+ "\n",
+ " $ mkvirtualenv my-environment\n",
+ "\n",
+ "Activating an environment:\n",
+ "\n",
+ " $ workon my-environment\n",
+ "\n",
+ "Whenever you have an environment activated, it is indicated by prefixing your bash prompt with the name of the environment surrounded by brackets.\n",
+ "\n",
+ "Deactivating an environment:\n",
+ "\n",
+ " $ deactivate\n",
+ "\n",
+ "Normally, `pip install` will try to install a package system-wide, for which you'd need administrator permissions. Whenever you have a virtual environment activated, `pip install` will install the package in the virtual environment automatically."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "<a id=\"biopython\"></a>\n",
+ "## Biopython\n",
+ "\n",
+ "<img src=\"http://biopython.org/DIST/docs/tutorial/images/biopython.jpg\" />\n",
+ "\n",
+ "### About Biopython\n",
+ "\n",
+ "Biopython is one of the big libraries for working with bioinformatics-related data (but not the only one). It is *Open Source* and ran by a team of developers from around the world under the OBF umbrella.\n",
+ "\n",
+ "Development started in 1998 and it is still actively maintained with a new release every 3-4 months. The library is mature and has had multiple publications (the whole library itself and sometimes its submodules).\n",
+ "\n",
+ "Biopython is compatible with Python 2.x and 3.x and tested on multiple operating systems and Python implementations.\n",
+ "\n",
+ "Some links with more information:\n",
+ "\n",
+ "- [Biopython homepage](http://biopython.org)\n",
+ "- [Git development repository](http://github.com/biopython/biopython)\n",
+ "- [Mailing list](http://lists.open-bio.org/pipermail/biopython/)\n",
+ "- [Biopython Tutorial and Cookbook](http://biopython.org/DIST/docs/tutorial/Tutorial.html)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Inside Biopython\n",
+ "\n",
+ "As one of the larger Python packages, these are some of the things provided by Biopython:\n",
+ "\n",
+ "- Rich objects representing various concepts (e.g., sequences, alignments, motifs).\n",
+ "\n",
+ "- File parsers and writers.\n",
+ " * Sequence files: fasta, fastq, genbank, abi, sff, etc.\n",
+ " * Alignment files: clustal, emboss, phylip, nexus, etc.\n",
+ " * Sequence search outputs: BLAST, HMMER, BLAT, etc.\n",
+ " * Phylogenetic trees: newick, nexus, phyloxml, etc.\n",
+ " * Sequence motifs: AlignAce, TRANSFAC, etc.\n",
+ " * Others: PDB files, etc.\n",
+ "\n",
+ "- Access to remote resources (e.g., Entrez, NCBI BLAST).\n",
+ "\n",
+ "- Application wrappers.\n",
+ "\n",
+ "- A simple graphing tool.\n",
+ "\n",
+ "- Simple algorithms (e.g., pairwise alignment, cluster analysis).\n",
+ "\n",
+ "- References such as codon tables and IUPAC sequences."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Characterizing Biopython\n",
+ "\n",
+ "Strengths:\n",
+ "\n",
+ "- Based on Python (readability, expressive constructs).\n",
+ "- Wide range of parsers with common interfaces.\n",
+ "- Access to online resources.\n",
+ "\n",
+ "Weaknesses:\n",
+ "\n",
+ "- Based on Python (?) (no error checks until runtime).\n",
+ "- Not always the fastest parsers."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "<a id=\"sequences\"></a>\n",
+ "## Working with sequences\n",
+ "\n",
+ "The `Seq` object is Biopython's main representation of nucleotide or protein sequences. It is essentially a string with alphabet information. Its constructor is available in the `Bio.Seq` module."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from Bio.Seq import Seq"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 8
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Sequence alphabets\n",
+ "\n",
+ "Let's make our first `Seq` object."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_seq = Seq('GGGTACGATAAA')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 51
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_seq"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 52,
+ "text": [
+ "Seq('GGGTACGATAAA', Alphabet())"
+ ]
+ }
+ ],
+ "prompt_number": 52
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Notice the bit about the alphabet. Biopython never tries to guess what alphabet your sequence is in. You have to be explicit yourself (recall `import this`)."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from Bio.Alphabet import generic_dna"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 53
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_dna = Seq('GGGTACGATAAA', generic_dna)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 55
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_dna"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 56,
+ "text": [
+ "Seq('GGGTACGATAAA', DNAAlphabet())"
+ ]
+ }
+ ],
+ "prompt_number": 56
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "`Seq` objects are almost the same as native Python `str` objects. They have similar methods and can be used with almost the same set of operators."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_dna.lower()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 57,
+ "text": [
+ "Seq('gggtacgataaa', DNAAlphabet())"
+ ]
+ }
+ ],
+ "prompt_number": 57
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_dna.endswith('N')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 58,
+ "text": [
+ "False"
+ ]
+ }
+ ],
+ "prompt_number": 58
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_dna + my_dna"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 66,
+ "text": [
+ "Seq('GGGTACGATAAAGGGTACGATAAA', DNAAlphabet())"
+ ]
+ }
+ ],
+ "prompt_number": 66
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "str(my_dna)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 67,
+ "text": [
+ "'GGGTACGATAAA'"
+ ]
+ }
+ ],
+ "prompt_number": 67
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Operations on sequences\n",
+ "\n",
+ "The plus feature of the `Seq` type is that we get to use additional functions from 'molecular biology'."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_rna = my_dna.transcribe()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 59
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_rna"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 60,
+ "text": [
+ "Seq('GGGUACGAUAAA', RNAAlphabet())"
+ ]
+ }
+ ],
+ "prompt_number": 60
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Here we see that running `transcribe()` returns a new RNA sequence. Biopython uses alphabet information to determine whether a `Seq` member function can be invoked or not."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "There are more, of course."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_dna.complement()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 61,
+ "text": [
+ "Seq('CCCATGCTATTT', DNAAlphabet())"
+ ]
+ }
+ ],
+ "prompt_number": 61
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_dna.reverse_complement()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 62,
+ "text": [
+ "Seq('TTTATCGTACCC', DNAAlphabet())"
+ ]
+ }
+ ],
+ "prompt_number": 62
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_protein = my_dna.translate()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 63
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "my_protein"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 64,
+ "text": [
+ "Seq('GYDK', ExtendedIUPACProtein())"
+ ]
+ }
+ ],
+ "prompt_number": 64
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Now try running `my_protein.transcribe()` in your interpreter. What happens?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### <span class=\"exercise\">Exercise: Six-frame translation</span>\n",
+ "\n",
+ "Write a function that takes a `Seq` object and prints all possible translation frames from it. For example, when using `CGATCGTAGCTGTAGCGCGATATATACTAGGG` as the input sequence, the output is (not necessarily in this order):\n",
+ "\n",
+ " RS*L*RDIY*\n",
+ " P*YISRYSYD\n",
+ " DRSCSAIYTR\n",
+ " PSIYRATATI\n",
+ " IVAVARYILG\n",
+ " LVYIALQLRS\n",
+ "\n",
+ "Additionally, try to see how to use an alternative translation table (hint: `Bio.Data` module)."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Storing additional information\n",
+ "\n",
+ "`Seq` objects are good for storing the sequence itself. But where do we store metadata such as sequence ID or interesting regions in the sequence?\n",
+ "\n",
+ "For this, we use the `SeqRecord` object from the `Bio.SeqRecord` module. It is essentially a thin wrap around the `Seq` object that also stores sequence metadata."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from Bio.SeqRecord import SeqRecord"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 69
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "record = SeqRecord(my_dna)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 87
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 88,
+ "text": [
+ "SeqRecord(seq=Seq('GGGTACGATAAA', DNAAlphabet()), id='<unknown id>', name='<unknown name>', description='<unknown description>', dbxrefs=[])"
+ ]
+ }
+ ],
+ "prompt_number": 88
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "ID: <unknown id>\n",
+ "Name: <unknown name>\n",
+ "Description: <unknown description>\n",
+ "Number of features: 0\n",
+ "Seq('GGGTACGATAAA', DNAAlphabet())\n"
+ ]
+ }
+ ],
+ "prompt_number": 89
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We saw that `SeqRecord` stores a `Seq` object and other metadata such as:\n",
+ "\n",
+ "* `id`: Sequence ID.\n",
+ "* `name`: Sequence name, usually the same as `id`.\n",
+ "* `description`: Sequence description.\n",
+ "* `dbxrefs`: A list of database cross references.\n",
+ "\n",
+ "There are also other metadata not shown here such as:\n",
+ "\n",
+ "* `letter_annotation`: Annotation per sequence position.\n",
+ "\n",
+ "It's enough to supply only a `Seq` object when creating `SeqRecord`. However, as we saw, it's not that useful to have `<unknown id>` and `<unknown description>` as metadata. "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "SeqRecord(my_dna, id='my precious', description='my precious sequence')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 73,
+ "text": [
+ "SeqRecord(seq=Seq('GGGTACGATAAA', DNAAlphabet()), id='my precious', name='<unknown name>', description='my precious sequence', dbxrefs=[])"
+ ]
+ }
+ ],
+ "prompt_number": 73
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "<a id=\"files\"></a>\n",
+ "## File I/O with Biopython\n",
+ "\n",
+ "As mentioned before, one of Biopython's strength is its wide range of parsing support. Briefly:\n",
+ "\n",
+ "* Sequence files: `Bio.SeqIO`\n",
+ "* Alignment files: `Bio.AlignIO`\n",
+ "* Sequence search files: `Bio.Blast` (soon to be `Bio.SearchIO`)\n",
+ "* Phylogenetic trees: `Bio.Phylo`\n",
+ "* Sequence motifs: `Bio.motifs`\n",
+ "* Protein structures: `Bio.PDB`\n",
+ "\n",
+ "These parsers may not be the fastest available, but they provide a common interface of objects within their domain.\n",
+ "\n",
+ "As an example, let's take a look at parsing sequence files."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Reading sequence files with `SeqIO`\n",
+ "\n",
+ "The main sequence input/output functions are all contained in the `Bio.SeqIO` module. Two of the most commonly used are `Bio.SeqIO.read` and `Bio.SeqIO.parse`. They provide the same functionality, except that the former is for files containing a single sequence and the latter is for files containing multiple sequences."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### `SeqIO.read`\n",
+ "\n",
+ "A simple function call that takes as input:\n",
+ "\n",
+ "1. The file name *or* a file handle object pointing to your sequence.\n",
+ "2. The sequence file format name.\n",
+ "\n",
+ "It returns a single `SeqRecord` object containing our sequence of interest."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from Bio import SeqIO"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 83
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "fasta_record = SeqIO.read('data/simple.fa', 'fasta')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 153
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "fasta_record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 154,
+ "text": [
+ "SeqRecord(seq=Seq('MGIKQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDR...EIK', SingleLetterAlphabet()), id='sp|P12464|RPOE_BACSU', name='sp|P12464|RPOE_BACSU', description='sp|P12464|RPOE_BACSU DNA-directed RNA polymerase subunit delta OS=Bacillus subtilis (strain 168) GN=rpoE PE=1 SV=1', dbxrefs=[])"
+ ]
+ }
+ ],
+ "prompt_number": 154
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print fasta_record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "ID: sp|P12464|RPOE_BACSU\n",
+ "Name: sp|P12464|RPOE_BACSU\n",
+ "Description: sp|P12464|RPOE_BACSU DNA-directed RNA polymerase subunit delta OS=Bacillus subtilis (strain 168) GN=rpoE PE=1 SV=1\n",
+ "Number of features: 0\n",
+ "Seq('MGIKQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDR...EIK', SingleLetterAlphabet())\n"
+ ]
+ }
+ ],
+ "prompt_number": 155
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The nice thing about this method, is that it abstracts over all the different file formats. If we want to parse another file which is a FASTQ instead of a FASTA file, we simply need to change the file name and the format name."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "fastq_record = SeqIO.read('data/easy.fastq', 'fastq')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 156
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "fastq_record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 157,
+ "text": [
+ "SeqRecord(seq=Seq('CCGCGACCTCTGTTCTGCAGCCCCTTCCCTTCCCCGCCTCCTGCTCTGCCGGGA...CCA', SingleLetterAlphabet()), id='HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1', name='HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1', description='HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1', dbxrefs=[])"
+ ]
+ }
+ ],
+ "prompt_number": 157
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print fastq_record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "ID: HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1\n",
+ "Name: HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1\n",
+ "Description: HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1\n",
+ "Number of features: 0\n",
+ "Per letter annotation for: phred_quality\n",
+ "Seq('CCGCGACCTCTGTTCTGCAGCCCCTTCCCTTCCCCGCCTCCTGCTCTGCCGGGA...CCA', SingleLetterAlphabet())\n"
+ ]
+ }
+ ],
+ "prompt_number": 158
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Of course, since the FASTQ file has additional quality information, we can now access it. In this case, the qualities are stored in `letter_annotations`."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print fastq_record.letter_annotations"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "{'phred_quality': [16, 10, 10, 10, 19, 8, 27, 31, 27, 32, 27, 10, 17, 32, 24, 32, 17, 10, 10, 25, 18, 34, 23, 25, 8, 16, 30, 33, 35, 33, 35, 33, 33, 35, 34, 31, 25, 25, 21, 31, 7, 13, 23, 13, 13, 22, 8, 22, 22, 22, 25, 27, 30, 31, 31, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2]}\n"
+ ]
+ }
+ ],
+ "prompt_number": 159
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Even more, `SeqIO` has support not only for plain text formats but also binary formats. Here's an example of `SeqIO` reading a Sanger sequencing trace file. Note the additional information (e.g. sequencing well) stored in the file is also parsed."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "abi_record = SeqIO.read('data/sanger.ab1', 'abi')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 160
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print abi_record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "ID: 226032_C-ME-18_pCAGseqF\n",
+ "Name: sanger\n",
+ "Number of features: 0\n",
+ "/polymer=POP7 \n",
+ "/run_finish=2009-12-12 11:44:49\n",
+ "/sample_well=B9\n",
+ "/run_start=2009-12-12 09:56:53\n",
+ "/machine_model=3730\n",
+ "/dye=Z-BigDyeV3\n",
+ "Per letter annotation for: phred_quality\n",
+ "Seq('GGGCGAGCKYYAYATTTTGGCAAGAATTGAGCTCTATGGCCACAACCATGGTGA...TTC', IUPACAmbiguousDNA())\n"
+ ]
+ }
+ ],
+ "prompt_number": 161
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Head over to the [official Biopython API documentation](http://biopython.org/DIST/docs/api/) for a complete list of supported formats."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### `SeqIO.parse`"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "`SeqIO.parse` is similar to `SeqIO.read`, but instead of returning a single `SeqRecord` object, we can iterate over the return value to get consecutive `SeqRecord` objects.\n",
+ "\n",
+ "This is similar to how we iterated over a filehandle to get consecutive lines:\n",
+ "\n",
+ " fh = open('my_file')\n",
+ " for line in fh:\n",
+ " print line\n",
+ " fh.close()\n",
+ "\n",
+ "However, instead of returning each line of the file, `SeqIO.parse` returns a single `SeqRecord` object per iteration and we do not need to call `close` afterwards because it is handled automatically by Biopython.\n",
+ "\n",
+ " for record in SeqIO.parse('my_sequence.fa', 'fasta'):\n",
+ " print record"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "for record in SeqIO.parse('data/parse.fastq', 'fastq'):\n",
+ " print record.seq"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "CCGCGACCTCTGTTCTGCAGCCCCTTCCCTTCCCCGCCTCCTGCTCTGCCGGGACTACGCACCGGCCTGATTGGTTACCCCCGGGGTGTCCTCGGTCACCA\n",
+ "CCGCGACCTCTGTTCTGCAGCCCCTTCCCTTCCCCGCCTCCTGCTCTGCCGGGACTACGCACCGGCCTGATTGGTTACCCCCGGGGTGTCCTCGGTCACCA\n"
+ ]
+ }
+ ],
+ "prompt_number": 163
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The advantage of `SeqIO.parse` is that it allows you to handle large, multi-sequence files gracefully. The file size may well exceed your memory, since it allows us to process the records one by one.\n",
+ "\n",
+ "`SeqIO.parse` supports the same set of formats that `SeqIO.read` supports, one example is shown below."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "for record in SeqIO.parse('data/roche.sff', 'sff'):\n",
+ " print record.id, len(record), record.seq[:10]"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "E3MFGYR02JWQ7T 265 tcagGGTCTA\n",
+ "E3MFGYR02JA6IL 271 tcagTTTTTT\n",
+ "E3MFGYR02JHD4H 310 tcagAAAGAC\n",
+ "E3MFGYR02GFKUC 299 tcagCGGCCG\n",
+ "E3MFGYR02FTGED 281 tcagTGGTAA\n",
+ "E3MFGYR02FR9G7 261 tcagCTCCGT\n",
+ "E3MFGYR02GAZMS 278 tcagAAAGAA\n",
+ "E3MFGYR02HHZ8O 221 tcagACTTTC\n",
+ "E3MFGYR02GPGB1 269 tcagAAGCAG\n",
+ "E3MFGYR02F7Z7G 219 tcagAATCAT\n"
+ ]
+ }
+ ],
+ "prompt_number": 164
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### <span class=\"exercise\">Exercise: Trimming sequences from a mangled FASTQ file</span>\n",
+ "\n",
+ "* From the interleaved FASTQ file `data/mangled.fq`, print all sequences of the first read pairs after trimming off their first five nucleotides.\n",
+ "* **Hint:** first pair and second pair records are marked with `/1` and `/2`, respectively."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### <span class=\"example\">Example: A poor man's FastQC</span>\n",
+ "\n",
+ "Those of you working with NGS data probably know the [FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) tool. It summarizes the quality of your raw sequencing reads over different metrics.\n",
+ "\n",
+ "<img src=\"files/images/fastqc.png\">\n",
+ "\n",
+ "Let's try to mimic the plot showing the base quality score distributions over the read length."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "import numpy as np"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 37
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "qualities = np.array([r.letter_annotations['phred_quality'] for r in\n",
+ " SeqIO.parse('data/mangled.fq', 'fastq')])"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 64
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We now have a (20, 36) shaped array of quality scores (only 20 sequences of 36 bases each). Conveniently, we can pass this directly to the matplotlib `boxplot` function.\n",
+ "\n",
+ "While we're at it, let's also draw some visual indication that we consider everything below 60 as suboptimal (using `axhspan`) and add proper labels."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "figsize(10, 6)\n",
+ "axhspan(60, 100, facecolor='green', alpha=0.1, lw=0)\n",
+ "axhspan(0, 60, facecolor='red', alpha=0.1, lw=0)\n",
+ "boxplot(qualities, sym='')\n",
+ "ylim(qualities.min() // 10 * 10, qualities.max() // 10 * 10 + 10)\n",
+ "xlabel('Read position')\n",
+ "ylabel('Phred-based quality score')\n",
+ "title('Base quality score distributions over the read length');"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "display_data",
+ "png": 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aiEhvH8fw2hcic2EOo76VxZXhiYjKiJ3MQouoOpEaETPWaJjiC5YSEVH1FhvP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\nrkJggg==\n",
+ "text": [
+ "<matplotlib.figure.Figure at 0x35e2e50>"
+ ]
+ }
+ ],
+ "prompt_number": 70
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Writing sequence files with `SeqIO`\n",
+ "\n",
+ "Often, after manipulating parsed sequences, we need to write it back to a file. This is accomplished using `SeqIO.write` in Biopython. The function takes as its input:\n",
+ "\n",
+ "1. An iterable returning `SeqRecord` objects (generators and lists are examples of iterables).\n",
+ "2. A filename to write to *or* a file-like handle.\n",
+ "3. The format to write to.\n",
+ "\n",
+ "It returns the number of sequences written."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "records = SeqIO.parse('data/parse.fastq', 'fastq')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 169
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "SeqIO.write(records, 'my_sequences.fa', 'fasta')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 170,
+ "text": [
+ "2"
+ ]
+ }
+ ],
+ "prompt_number": 170
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Note that we're free to write the output format as any format supported by `SeqIO.write` so long as the information is adequate. In this case, reading the `my_sequences.fa` and writing it back to `parse.fastq` would not be possible since we have discarded the quality information.\n",
+ "\n",
+ "Additionally, the sequence records are written one-by-one to the file (courtesy of `SeqIO.parse`). So even if the `data/parse.fastq` is 10GB large, we can run the commands with only 1GB of free memory (for example)."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Additional `SeqIO` methods\n",
+ "\n",
+ "There are several more useful `SeqIO` functions, which you are free to try out on your own:\n",
+ "\n",
+ "* `SeqIO.index`: For efficiently fetching random records from a large sequence file.\n",
+ "* `SeqIO.index_db`: Similar to `SeqIO.index`, but with a persistent index.\n",
+ "* `SeqIO.convert`: Shortcut for converting between file formats."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "<a id=\"entrez\"></a>\n",
+ "## Fetching from online resources: NCBI's Entrez\n",
+ "\n",
+ "The `Bio.Entrez` library provides interface to [NCBI's Entrez e-utilities](https://www.ncbi.nlm.nih.gov/books/NBK25500/). One example we are demonstrating today is the `Entrez.efetch` utility to retrieve various records from one of NCBI's databases."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from Bio import Entrez"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 171
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "To monitor potential excessive use of their services, NCBI requests you to specify your email address with each request. With Biopython, you can set it once for your session like this:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "Entrez.email = 'python@lumc.nl'"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 172
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Fetching with `efetch`\n",
+ "\n",
+ "The `Entrez.efetch` function returns a file-like handle that instead of pointing to a local file, points to a remote resource. This file handle is similar to the local file handle we saw on Tuesday."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "efetch_handle = Entrez.efetch(db=\"nucleotide\", id=\"NM_005804\", rettype=\"gb\", retmode=\"text\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 127
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "We can of course do an `efetch_handle.read()` and see the entire contents of the genbank file. But we know how to work with `SeqIO.read` now, so let's use that instead (recall that `SeqIO.read` works equally well with file handles and local file names)."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "ncbi_record = SeqIO.read(efetch_handle, 'genbank')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 128
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print ncbi_record"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "ID: NM_005804.3\n",
+ "Name: NM_005804\n",
+ "Description: Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant 1, mRNA.\n",
+ "Number of features: 13\n",
+ "/comment=REVIEWED REFSEQ: This record has been curated by NCBI staff. The\n",
+ "reference sequence was derived from DA432925.1, BC001009.2 and\n",
+ "BM792110.1.\n",
+ "This sequence is a reference standard in the RefSeqGene project.\n",
+ "On Oct 14, 2010 this sequence version replaced gi:21040370.\n",
+ "Summary: This gene encodes a member of the DEAD box protein family.\n",
+ "These proteins are characterized by the conserved motif\n",
+ "Asp-Glu-Ala-Asp (DEAD) and are putative RNA helicases. They are\n",
+ "implicated in a number of cellular processes involving alteration\n",
+ "of RNA secondary structure, such as translation initiation, nuclear\n",
+ "and mitochondrial splicing, and ribosome and spliceosome assembly.\n",
+ "Based on their distribution patterns, some members of the DEAD box\n",
+ "protein family are believed to be involved in embryogenesis,\n",
+ "spermatogenesis, and cellular growth and division. Alternatively\n",
+ "spliced transcript variants encoding different isoforms have been\n",
+ "found. [provided by RefSeq, Feb 2011].\n",
+ "Transcript Variant: This variant (1) represents the predominant,\n",
+ "protein-coding transcript.\n",
+ "Publication Note: This RefSeq record includes a subset of the\n",
+ "publications that are available for this gene. Please see the Gene\n",
+ "record to access additional publications.\n",
+ "##Evidence-Data-START##\n",
+ "Transcript exon combination :: U90426.1, BC001009.2 [ECO:0000332]\n",
+ "RNAseq introns :: single sample supports all introns\n",
+ " ERS025084 [ECO:0000348]\n",
+ "##Evidence-Data-END##\n",
+ "COMPLETENESS: complete on the 3' end.\n",
+ "/sequence_version=3\n",
+ "/source=Homo sapiens (human)\n",
+ "/taxonomy=['Eukaryota', 'Metazoa', 'Chordata', 'Craniata', 'Vertebrata', 'Euteleostomi', 'Mammalia', 'Eutheria', 'Euarchontoglires', 'Primates', 'Haplorrhini', 'Catarrhini', 'Hominidae', 'Homo']\n",
+ "/keywords=['RefSeq']\n",
+ "/references=[Reference(title='DDX39 acts as a suppressor of invasion for bladder cancer', ...), Reference(title='Clinical proteomics identified ATP-dependent RNA helicase DDX39 as a novel biomarker to predict poor prognosis of patients with gastrointestinal stromal tumor', ...), Reference(title='Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis', ...), Reference(title='Interferon-induced antiviral protein MxA interacts with the cellular RNA helicases UAP56 and URH49', ...), Reference(title='The cellular DExD/H-box RNA-helicases UAP56 and URH49 exhibit a CRM1-independent nucleocytoplasmic shuttling activity', ...), Reference(title='Growth-regulated expression and G0-specific turnover of the mRNA that encodes URH49, a mammalian DExH/D box protein that is highly related to the mRNA export protein UAP56', ...), Reference(title='Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region', ...), Reference(title='TREX is a conserved complex coupling transcription with messenger RNA export', ...), Reference(title='Directed proteomic analysis of the human nucleolus', ...), Reference(title='The BAT1 gene in the MHC encodes an evolutionarily conserved putative nuclear RNA helicase of the DEAD family', ...)]\n",
+ "/accessions=['NM_005804']\n",
+ "/data_file_division=PRI\n",
+ "/date=07-JUL-2013\n",
+ "/organism=Homo sapiens\n",
+ "/gi=308522777\n",
+ "Seq('AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCC...AAA', IUPACAmbiguousDNA())\n"
+ ]
+ }
+ ],
+ "prompt_number": 129
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "`Entrez.efetch` also allows you to fetch multiple records in one go:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "efetch_handle = Entrez.efetch(db=\"nucleotide\", id=[\"NM_005804\",\"NM_000967\"], rettype=\"gb\", retmode=\"text\")"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 120
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "for record in SeqIO.parse(efetch_handle, 'genbank'):\n",
+ " print record.id, record.description"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "NM_005804.3 Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant 1, mRNA.\n",
+ "NM_000967.3 Homo sapiens ribosomal protein L3 (RPL3), transcript variant 1, mRNA.\n"
+ ]
+ }
+ ],
+ "prompt_number": 122
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "For a full argument list of `Entrez.efetch`, consult its [documentation page](https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.EFetch)."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Other `Bio.Entrez` utilities\n",
+ "\n",
+ "Biopython has the entire Entrez suite supported. A complete list of the Entrez services is available in its [documentation](https://www.ncbi.nlm.nih.gov/books/NBK25500/)."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "<a id=\"blast\"><a/>\n",
+ "## Performing a remote BLAST search\n",
+ "\n",
+ "A common action for bioinformaticians is to perform a BLAST search. Biopython provides a way to automate the search and helps you interpret the results."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Using NCBI's BLAST\n",
+ "\n",
+ "Entrez is not the only online service Biopython interacts with. We can also submit BLAST searches to NCBI using the `qblast` function in the `Bio.Blast.NCBIWWW` module.\n",
+ "\n",
+ "Similar to Entrez, Biopython tries to conform to the NCBI's remote BLAST required parameters in the function call. The official NCBI documentation is [here](https://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html).\n",
+ "\n",
+ "Let's do a short BLAST search using our earlier fetched `ncbi_record` (NM_005804). "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from Bio.Blast.NCBIWWW import qblast"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 131
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "blast_handle = qblast('blastn', 'refseq_mrna', ncbi_record.seq)"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 132
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "By default, the command returns the BLAST result in an XML file (one of the available formats to download from an interactive BLAST session). We will use `blast_handle` in the next section, but of course we could also write the results to a file for viewing later:\n",
+ "\n",
+ " blast_file = open('my_blast_output.xml', 'w')\n",
+ " blast_file.write(blast_handle.read())\n",
+ " blast_file.close()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Parsing the BLAST search results\n",
+ "\n",
+ "Of course, Biopython has parsing capabilities for the results as well. As mentioned briefly above, parsing for these types of file is available in the `Bio.Blast.NCBIXML` submodule and `Bio.SearchIO` submodule. The former is an old module that will be deprecated soon and replaced by the latter (which is still in experimental stage, but already stable enough).\n",
+ "\n",
+ "Here's a short example using `Bio.SearchIO`:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from Bio import SearchIO"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 136
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "qresult = SearchIO.read(blast_handle, 'blast-xml')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 137
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "qresult"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 138,
+ "text": [
+ "QueryResult(id='22127', 50 hits)"
+ ]
+ }
+ ],
+ "prompt_number": 138
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "print qresult"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "Program: blastn (2.2.28+)\n",
+ " Query: 22127 (1558)\n",
+ " No definition line\n",
+ " Target: refseq_mrna\n",
+ " Hits: ---- ----- ----------------------------------------------------------\n",
+ " # # HSP ID + description \n",
+ " ---- ----- ----------------------------------------------------------\n",
+ " 0 1 gi|308522777|ref|NM_005804.3| Homo sapiens DEAD (Asp-G...\n",
+ " 1 1 gi|397471065|ref|XM_003807080.1| PREDICTED: Pan panisc...\n",
+ " 2 1 gi|426387514|ref|XM_004060164.1| PREDICTED: Gorilla go...\n",
+ " 3 1 gi|395750601|ref|XM_002828787.2| PREDICTED: Pongo abel...\n",
+ " 4 1 gi|402904531|ref|XM_003915048.1| PREDICTED: Papio anub...\n",
+ " 5 1 gi|426387518|ref|XM_004060166.1| PREDICTED: Gorilla go...\n",
+ " 6 1 gi|403302190|ref|XM_003941697.1| PREDICTED: Saimiri bo...\n",
+ " 7 1 gi|301601638|ref|NM_001193491.1| Macaca mulatta DEAD (...\n",
+ " 8 1 gi|441628855|ref|XM_003275677.2| PREDICTED: Nomascus l...\n",
+ " 9 1 gi|478537026|ref|XM_004442573.1| PREDICTED: Ceratother...\n",
+ " 10 1 gi|472358840|ref|XM_004398985.1| PREDICTED: Odobenus r...\n",
+ " 11 1 gi|410950597|ref|XM_003981942.1| PREDICTED: Felis catu...\n",
+ " 12 1 gi|395850754|ref|XM_003797893.1| PREDICTED: Otolemur g...\n",
+ " 13 1 gi|511847827|ref|XM_004748233.1| PREDICTED: Mustela pu...\n",
+ " 14 1 gi|466046657|ref|XM_004277418.1| PREDICTED: Orcinus or...\n",
+ " 15 1 gi|470600673|ref|XM_004312273.1| PREDICTED: Tursiops t...\n",
+ " 16 1 gi|301771295|ref|XM_002920972.1| PREDICTED: Ailuropoda...\n",
+ " 17 1 gi|345787717|ref|XM_533895.3| PREDICTED: Canis lupus f...\n",
+ " 18 1 gi|344283234|ref|XM_003413330.1| PREDICTED: Loxodonta ...\n",
+ " 19 1 gi|471416597|ref|XM_004389765.1| PREDICTED: Trichechus...\n",
+ " 20 1 gi|426228875|ref|XM_004008473.1| PREDICTED: Ovis aries...\n",
+ " 21 1 gi|511847823|ref|XM_004748231.1| PREDICTED: Mustela pu...\n",
+ " 22 1 gi|511847825|ref|XM_004748232.1| PREDICTED: Mustela pu...\n",
+ " 23 1 gi|77736448|ref|NM_001034752.1| Bos taurus DEAD (Asp-G...\n",
+ " 24 1 gi|507964305|ref|XM_004688236.1| PREDICTED: Condylura ...\n",
+ " 25 2 gi|335282777|ref|XM_003123370.2| PREDICTED: Sus scrofa...\n",
+ " 26 1 gi|514445080|ref|XM_004999847.1| PREDICTED: Cavia porc...\n",
+ " 27 2 gi|513022593|ref|XM_004872489.1| PREDICTED: Heteroceph...\n",
+ " 28 1 gi|395837043|ref|XM_003791407.1| PREDICTED: Otolemur g...\n",
+ " 29 2 gi|335282779|ref|XM_003354105.1| PREDICTED: Sus scrofa...\n",
+ " ~~~\n",
+ " 47 1 gi|213511505|ref|NM_001141379.1| Salmo salar ATP-depen...\n",
+ " 48 1 gi|524974020|ref|XM_005086794.1| PREDICTED: Mesocricet...\n",
+ " 49 1 gi|524974018|ref|XM_005086793.1| PREDICTED: Mesocricet...\n"
+ ]
+ }
+ ],
+ "prompt_number": 139
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Notice that the function call is very similar to `SeqIO`. However, the returned `QueryResult` object is something we have not seen before. In general, this is a container object for all our results.\n",
+ "\n",
+ "The main principle of `Bio.SearchIO` objects is that for all sequence database searches, we have at least three layers of containers:\n",
+ "\n",
+ "1. The query itself (`QueryResult`).\n",
+ "2. All the database hits from the query (`Hit`).\n",
+ "3. All the locations in a database record where alignments are found (`HSP`, for high-scoring pair)."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "# for every hit in the first 10 query result\n",
+ "for hit in qresult[:10]:\n",
+ " # for every hsp in hit\n",
+ " for hsp in hit:\n",
+ " # show the hit ID and how long the match spans the hit (ungapped)\n",
+ " print hit.id, hsp.hit_span"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "output_type": "stream",
+ "stream": "stdout",
+ "text": [
+ "gi|308522777|ref|NM_005804.3| 1558\n",
+ "gi|397471065|ref|XM_003807080.1| 1540\n",
+ "gi|426387514|ref|XM_004060164.1| 1539\n",
+ "gi|395750601|ref|XM_002828787.2| 1536\n",
+ "gi|402904531|ref|XM_003915048.1| 1562\n",
+ "gi|426387518|ref|XM_004060166.1| 1428\n",
+ "gi|403302190|ref|XM_003941697.1| 1539\n",
+ "gi|301601638|ref|NM_001193491.1| 1300\n",
+ "gi|441628855|ref|XM_003275677.2| 1419\n",
+ "gi|478537026|ref|XM_004442573.1| 1402\n"
+ ]
+ }
+ ],
+ "prompt_number": 148
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "And all these containers are indexable."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "# get the Hit object with the ID 'gi|308522777|ref|NM_005804.3|'\n",
+ "qresult['gi|308522777|ref|NM_005804.3|']"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 149,
+ "text": [
+ "Hit(id='gi|308522777|ref|NM_005804.3|', query_id='22127', 1 hsps)"
+ ]
+ }
+ ],
+ "prompt_number": 149
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "# get the first Hit object\n",
+ "qresult[0]"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 150,
+ "text": [
+ "Hit(id='gi|308522777|ref|NM_005804.3|', query_id='22127', 1 hsps)"
+ ]
+ }
+ ],
+ "prompt_number": 150
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "# get the first HSP of the first Hit object\n",
+ "qresult[0][0]"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 151,
+ "text": [
+ "HSP(hit_id='gi|308522777|ref|NM_005804.3|', query_id='22127', 1 fragments)"
+ ]
+ }
+ ],
+ "prompt_number": 151
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "There is more to these objects than can be shown here. You can consult the [official API documentation](http://biopython.org/DIST/docs/api/) for a full reference."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### <span class=\"exercise\">Exercise: Navigating through a BLAST result</span>\n",
+ "\n",
+ "From the last BLAST result we have, fetch the full sequences of the top 10 hits that are not predicted sequences."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "<a id=\"beyond\"></a>\n",
+ "## Beyond Biopython\n",
+ "\n",
+ "Biopython is not the only useful 3rd party Python library out there. There is still much ground it does not cover, which is covered by other modules. Some of the modules you may find useful:\n",
+ "\n",
+ "- [pysam](http://wwwfgu.anat.ox.ac.uk/~andreas/documentation/samtools/api.html): A samtools wrapper for parsing and writing SAM/BAM alignment files.\n",
+ "- [PyVCF](http://pyvcf.readthedocs.org/en/latest/): For working with VCF files.\n",
+ "- [track](http://xapple.github.io/track/): For working with genome tracks (e.g. BED tracks).\n",
+ "- [pybedtools](http://pythonhosted.org/pybedtools/): A bedtools wrapper for working with genome tracks.\n",
+ "- [metaseq](http://pythonhosted.org/metaseq/): A framework for exploring genomic data.\n",
+ "- [GEMINI](http://gemini.readthedocs.org/): A flexible framework for exploring genome variation.\n",
+ "- ..."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "from IPython.core.display import HTML\n",
+ "def custom_style():\n",
+ " style = open('styles/notebook.css', 'r').read()\n",
+ " return HTML('<style>' + style + '</style>')\n",
+ "def custom_script():\n",
+ " script = open('styles/notebook.js', 'r').read()\n",
+ " return HTML('<script>' + script + '</script>')"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [],
+ "prompt_number": 49
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "custom_style()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "html": [
+ "<style>/*\n",
+ " https://github.com/CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers\n",
+ "*/\n",
+ "@font-face {\n",
+ " font-family: \"Computer Modern\";\n",
+ " src: url('http://mirrors.ctan.org/fonts/cm-unicode/fonts/otf/cmunss.otf');\n",
+ "}\n",
+ "div.cell{\n",
+ " width:800px;\n",
+ " margin-left:16% !important;\n",
+ " margin-right:auto;\n",
+ "}\n",
+ "h1 {\n",
+ " font-family: Helvetica, serif;\n",
+ "}\n",
+ "h4{\n",
+ " margin-top:12px;\n",
+ " margin-bottom: 3px;\n",
+ " }\n",
+ "div.text_cell_render{\n",
+ " font-family: Computer Modern, \"Helvetica Neue\", Arial, Helvetica, Geneva, sans-serif;\n",
+ " line-height: 145%;\n",
+ " font-size: 130%;\n",
+ " width:800px;\n",
+ " margin-left:auto;\n",
+ " margin-right:auto;\n",
+ "}\n",
+ ".CodeMirror{\n",
+ " font-family: \"Source Code Pro\", source-code-pro,Consolas, monospace;\n",
+ "}\n",
+ ".prompt{\n",
+ " display: None;\n",
+ "}\n",
+ ".text_cell_render .exercise {\n",
+ " font-weight: 300;\n",
+ " /*font-size: 22pt;*/\n",
+ " color: #4057A1;\n",
+ " font-style: italic;\n",
+ " /*margin-bottom: .5em;\n",
+ " margin-top: 0.5em;\n",
+ " display: block;*/\n",
+ "}\n",
+ ".text_cell_render .example {\n",
+ " font-weight: 300;\n",
+ " color: #40A157;\n",
+ " font-style: italic;\n",
+ "}\n",
+ "\n",
+ ".warning{\n",
+ " color: rgb( 240, 20, 20 )\n",
+ "}\n",
+ "</style>"
+ ],
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 50,
+ "text": [
+ "<IPython.core.display.HTML at 0x7fa82685a510>"
+ ]
+ }
+ ],
+ "prompt_number": 50
+ },
+ {
+ "cell_type": "code",
+ "collapsed": false,
+ "input": [
+ "custom_script()"
+ ],
+ "language": "python",
+ "metadata": {},
+ "outputs": [
+ {
+ "html": [
+ "<script>// https://github.com/CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers\n",
+ "MathJax.Hub.Config({\n",
+ " TeX: {\n",
+ " extensions: [\"AMSmath.js\"]\n",
+ " },\n",
+ " tex2jax: {\n",
+ " inlineMath: [ ['$','$'], [\"\\\\(\",\"\\\\)\"] ],\n",
+ " displayMath: [ ['$$','$$'], [\"\\\\[\",\"\\\\]\"] ]\n",
+ " },\n",
+ " displayAlign: 'center', // Change this to 'center' to center equations.\n",
+ " \"HTML-CSS\": {\n",
+ " styles: {'.MathJax_Display': {\"margin\": 4}}\n",
+ " }\n",
+ " });\n",
+ "</script>"
+ ],
+ "metadata": {},
+ "output_type": "pyout",
+ "prompt_number": 8,
+ "text": [
+ "<IPython.core.display.HTML at 0x351cc10>"
+ ]
+ }
+ ],
+ "prompt_number": 8
+ }
+ ],
+ "metadata": {}
+ }
+ ]
+}
\ No newline at end of file
diff --git a/data/easy.fastq b/data/easy.fastq
new file mode 100644
index 0000000000000000000000000000000000000000..fa2cb5c05917142d14d2d4d09aa1b503ab58ee15
--- /dev/null
+++ b/data/easy.fastq
@@ -0,0 +1,4 @@
+@HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1
+CCGCGACCTCTGTTCTGCAGCCCCTTCCCTTCCCCGCCTCCTGCTCTGCCGGGACTACGCACCGGCCTGATTGGTTACCCCCGGGGTGTCCTCGGTCACCA
++
+1+++4)<@<A<+2A9A2++:3C8:)1?BDBDBBDC@::6@(.8..7)777:<?@@##############################################
diff --git a/data/mangled.fq b/data/mangled.fq
new file mode 100755
index 0000000000000000000000000000000000000000..b4694d89270bacd92db12d751e743ebc1083f003
--- /dev/null
+++ b/data/mangled.fq
@@ -0,0 +1,80 @@
+@IRIS:7:1:17:394#0/1
+GTCAGGACAAGAAAGACAANTCCAATTNACATTATG
++IRIS:7:1:17:394#0/1
+aaabaa`]baaaaa_aab]D^^`b`aYDW]abaa`^
+@IRIS:7:1:17:800#0/2
+GGAAACACTACTTAGGCTTATAAGATCNGGTTGCGG
++IRIS:7:1:17:800#0/2
+ababbaaabaaaaa`]`ba`]`aaaaYD\\_a``XT
+@IRIS:7:1:17:1757#0/1
+TTTTCTCGACGATTTCCACTCCTGGTCNACGAATCC
++IRIS:7:1:17:1757#0/1
+aaaaaa``aaa`aaaa_^a```]][Z[DY^XYV^_Y
+@IRIS:7:1:17:1479#0/2
+CATATTGTAGGGTGGATCTCGAAAGATATGAAAGAT
++IRIS:7:1:17:1479#0/2
+abaaaaa`a```^aaaaa`_]aaa`aaa__a_X]``
+@IRIS:7:1:17:150#0/1
+TGATGTACTATGCATATGAACTTGTATGCAAAGTGG
++IRIS:7:1:17:150#0/1
+abaabaa`aaaaaaa^ba_]]aaa^aaaaa_^][aa
+@IRIS:7:1:18:443#0/2
+CGATTCCACGTGATCAAAGAAACTAGAGTGGGTCTG
++IRIS:7:1:18:443#0/2
+abbbbbababababababbaaaababababa``aaa
+@IRIS:7:1:18:622#0/1
+TGGGCTCCGGGAGGGGGGGATGTAAGAAAAATTACA
++IRIS:7:1:18:622#0/1
+ababaaaabaa_``aa``]^aa_`aa_Z_aaaaa^b
+@IRIS:7:1:18:628#0/2
+AAAACAATTAGATGATGATAAAATTAACAAAGATTG
++IRIS:7:1:18:628#0/2
+aaaaaaaaaaaaaaaaaa`^```a`aaa`^`a`a^a
+@IRIS:7:1:18:1642#0/1
+AATAAGTTTTAAACAGCTAACCTTGTTTACTTCTTT
++IRIS:7:1:18:1642#0/1
+aaaaaa_aaababba_baa\aaaaa`a`baaaaa`a
+@IRIS:7:1:18:1260#0/2
+AGATGTACAAATTTGTATTTCAAGACAGATTTATAA
++IRIS:7:1:18:1260#0/2
+abaab`bab`abaab`bbaaab_babb]aaaabba^
+@IRIS:7:1:18:16#0/1
+AGGTTCGTGTTGAGTGTTGCCTCTTTTTCTGTTAAT
++IRIS:7:1:18:16#0/1
+abb`bbbabbbaWa`baba_Z``babaa[_aa`\X_
+@IRIS:7:1:18:1150#0/2
+AGCTAGGTAAAGTTATACATACAGATGGCCGAACTT
++IRIS:7:1:18:1150#0/2
+abaaabb^bbabaabbbaaaaaaaaa`W^`a`_^``
+@IRIS:7:1:18:1819#0/1
+CTTACCGCGGTTTTAATAATTTTACCATCACTTCGT
++IRIS:7:1:18:1819#0/1
+abbbbbbbba[aba``ba`bbba^]]``___]`_^W
+@IRIS:7:1:18:1232#0/2
+AAGAAATATATCGAAGAGTTAGTGCTGGACTGGCTG
++IRIS:7:1:18:1232#0/2
+a^aY\Y^]^Y[WYUBBBBBBBBBBBBBBBBBBBBBB
+@IRIS:7:1:19:1343#0/1
+GGCATCTCCAGAGGAGGCTGTACCTGTGGAATAGCA
++IRIS:7:1:19:1343#0/1
+abbbbbbbbababaaba_a\FXQXNVKO^F[RWYSQ
+@IRIS:7:1:19:1885#0/2
+TGAATTTCAATACGTGCAATTCCCTCCATACCAGAG
++IRIS:7:1:19:1885#0/2
+abbbbbbbbbbbabaa[a_aba_^aa^_a``UZaab
+@IRIS:7:1:19:691#0/1
+GACATGAATTGTGTTTTAGGATAATTGATTAAAAAT
++IRIS:7:1:19:691#0/1
+aaabbb`aaab`baaaaaba`aaababaaaaaaaab
+@IRIS:7:1:19:1159#0/2
+CAAGAATCATACTCAACATGCAAGCGATGATGAACA
++IRIS:7:1:19:1159#0/2
+`a^`bbabba\_a^[_a\\]][GY]YBBBBBBBBBB
+@IRIS:7:1:19:1310#0/1
+GGAGATGATTTGACGATTCGCAGTCGGATCATCTGC
++IRIS:7:1:19:1310#0/1
+aaabbabbabbbbbbbbbbbbbbabbbaabaa^a^Z
+@IRIS:7:1:19:1108#0/2
+GGATAATAAGCTCATGGGTTTGGTCTTACTTCACCG
++IRIS:7:1:19:1108#0/2
+abaaaaaaaaaaaaaaa`^aaaa]]a``_a`aa^_Z
diff --git a/data/my_blast_output.xml b/data/my_blast_output.xml
new file mode 100644
index 0000000000000000000000000000000000000000..2c2a0d181d3bcf66d49b96ada3e4a2f04db54957
--- /dev/null
+++ b/data/my_blast_output.xml
@@ -0,0 +1,1557 @@
+<?xml version="1.0"?>
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
+<BlastOutput>
+ <BlastOutput_program>blastn</BlastOutput_program>
+ <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version>
+ <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
+ <BlastOutput_db>refseq_mrna</BlastOutput_db>
+ <BlastOutput_query-ID>43607</BlastOutput_query-ID>
+ <BlastOutput_query-def>No definition line</BlastOutput_query-def>
+ <BlastOutput_query-len>1558</BlastOutput_query-len>
+ <BlastOutput_param>
+ <Parameters>
+ <Parameters_expect>10</Parameters_expect>
+ <Parameters_sc-match>2</Parameters_sc-match>
+ <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
+ <Parameters_gap-open>5</Parameters_gap-open>
+ <Parameters_gap-extend>2</Parameters_gap-extend>
+ <Parameters_filter>L;m;</Parameters_filter>
+ </Parameters>
+ </BlastOutput_param>
+<BlastOutput_iterations>
+<Iteration>
+ <Iteration_iter-num>1</Iteration_iter-num>
+ <Iteration_query-ID>43607</Iteration_query-ID>
+ <Iteration_query-def>No definition line</Iteration_query-def>
+ <Iteration_query-len>1558</Iteration_query-len>
+<Iteration_hits>
+<Hit>
+ <Hit_num>1</Hit_num>
+ <Hit_id>gi|308522777|ref|NM_005804.3|</Hit_id>
+ <Hit_def>Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant 1, mRNA</Hit_def>
+ <Hit_accession>NM_005804</Hit_accession>
+ <Hit_len>1558</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2810.93</Hsp_bit-score>
+ <Hsp_score>3116</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1558</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1558</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1558</Hsp_identity>
+ <Hsp_positive>1558</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1558</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCTAAAAAAAAAAAAAAAAAAA</Hsp_qseq>
+ <Hsp_hseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCTAAAAAAAAAAAAAAAAAAA</Hsp_hseq>
+ <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>2</Hit_num>
+ <Hit_id>gi|397471065|ref|XM_003807080.1|</Hit_id>
+ <Hit_def>PREDICTED: Pan paniscus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003807080</Hit_accession>
+ <Hit_len>1687</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2727.98</Hsp_bit-score>
+ <Hsp_score>3024</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1540</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1540</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1529</Hsp_identity>
+ <Hsp_positive>1529</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1540</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCTA</Hsp_qseq>
+ <Hsp_hseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCGGCAGCTCGAGTCTGAGCGCCCGGCGGAAAACCGAAGTCAGAAGTCTCTCTTAGCAGCACGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTATGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCAGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATTGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCTA</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>3</Hit_num>
+ <Hit_id>gi|426387514|ref|XM_004060164.1|</Hit_id>
+ <Hit_def>PREDICTED: Gorilla gorilla gorilla DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A, transcript variant 1 (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004060164</Hit_accession>
+ <Hit_len>1687</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2695.52</Hsp_bit-score>
+ <Hsp_score>2988</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1539</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1539</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1521</Hsp_identity>
+ <Hsp_positive>1521</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1539</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_qseq>
+ <Hsp_hseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCGGCAGCTCGTGTCTGAGCGCCCGGCGGAATACCGAAGTCAGAAGGCTCTGTTAGCAGCACGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACAGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGATGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCCTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGAGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTTAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTATCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATTGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>4</Hit_num>
+ <Hit_id>gi|395750601|ref|XM_002828787.2|</Hit_id>
+ <Hit_def>PREDICTED: Pongo abelii DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A, transcript variant 1 (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_002828787</Hit_accession>
+ <Hit_len>1685</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2645.02</Hsp_bit-score>
+ <Hsp_score>2932</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1536</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1536</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1508</Hsp_identity>
+ <Hsp_positive>1508</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1536</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCA</Hsp_qseq>
+ <Hsp_hseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCGGCAGCTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTCAGAAGGCTGTCTTAGCAGCACGCGGAGACGAAAGGGGTGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCTTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGAATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACAGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTTGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCAGGCCGCATCCTGGCGCTTGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCCTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATTGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATTGAGCAGAGCCGGTAACCACCACATGCCAGAGCCGCCCACCCGGAGCCTCCCGCATGCAGCTTCACCTCCCCTTTCCAGGAGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGACTCCCACCCCA</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>5</Hit_num>
+ <Hit_id>gi|402904531|ref|XM_003915048.1|</Hit_id>
+ <Hit_def>PREDICTED: Papio anubis DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003915048</Hit_accession>
+ <Hit_len>1975</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2572.89</Hsp_bit-score>
+ <Hsp_score>2852</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>2</Hsp_query-from>
+ <Hsp_query-to>1539</Hsp_query-to>
+ <Hsp_hit-from>268</Hsp_hit-from>
+ <Hsp_hit-to>1829</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1505</Hsp_identity>
+ <Hsp_positive>1505</Hsp_positive>
+ <Hsp_gaps>24</Hsp_gaps>
+ <Hsp_align-len>1562</Hsp_align-len>
+ <Hsp_qseq>GCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTG----------CCAGAGCCGCCCACCCG--------------GAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_qseq>
+ <Hsp_hseq>GCAGCAGCCCGACGCAAGAGGCAGGAAGCGCGGCAGCTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTCAGAAGGCTCTCTTAGCAGCACGCGGAGAAGAACGGGGAGCTCGCATCATGGCAGAACAGGATGTGGAAAATGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCCCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCACGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAAGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTTAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGGGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAACAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCCTGGACGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTATGACATGCCTGAGGACTCGGACACTTACTTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATTGACATATCCACATACATTGAGCAGAGCCGGTAACCACCACGTGCCCCGGCAGTCCAGAGCCGCCCACCCGGAGCTGCCCACCCAGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGTGCCACTGTTGAGAAGTTAGAAATTGTGTGAGAATAAACTTGTTATTATGGAAACCTGGCTCCCACACCATCT</Hsp_hseq>
+ <Hsp_midline>||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>6</Hit_num>
+ <Hit_id>gi|426387518|ref|XM_004060166.1|</Hit_id>
+ <Hit_def>PREDICTED: Gorilla gorilla gorilla DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A, transcript variant 3 (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004060166</Hit_accession>
+ <Hit_len>1774</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2535.02</Hsp_bit-score>
+ <Hsp_score>2810</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>112</Hsp_query-from>
+ <Hsp_query-to>1539</Hsp_query-to>
+ <Hsp_hit-from>199</Hsp_hit-from>
+ <Hsp_hit-to>1626</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1419</Hsp_identity>
+ <Hsp_positive>1419</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1428</Hsp_align-len>
+ <Hsp_qseq>CAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_qseq>
+ <Hsp_hseq>CAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACAGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGATGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCCTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGAGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTTAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTATCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATTGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_hseq>
+ <Hsp_midline>||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>7</Hit_num>
+ <Hit_id>gi|403302190|ref|XM_003941697.1|</Hit_id>
+ <Hit_def>PREDICTED: Saimiri boliviensis boliviensis DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A, transcript variant 1 (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003941697</Hit_accession>
+ <Hit_len>1684</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2327.63</Hsp_bit-score>
+ <Hsp_score>2580</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>7</Hsp_query-from>
+ <Hsp_query-to>1539</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1539</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1442</Hsp_identity>
+ <Hsp_positive>1442</Hsp_positive>
+ <Hsp_gaps>14</Hsp_gaps>
+ <Hsp_align-len>1543</Hsp_align-len>
+ <Hsp_qseq>AGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTG----------CCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_qseq>
+ <Hsp_hseq>AGCCAGACGCAGGAGGCAGGAAGCGCGGCAGCTCGTGCCTGAGCTCCCGGCAGATAACCGAAGTCGGAAGGCTCTCCTAGCAGCACGCG---AAGAACTGCGAGCCAGCAGCATGGCAGAACAGGATGTGGAAAACGAGCTTTTGGATTACGACGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCGCTAAAAAAGACATGAAGGGATCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTTCAGCACGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCGAAGTCTGGGATGGGCAAGACCGCAGTCTTCGTGCTAGCCACCCTGCAACAGATCGAGCCCGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGGGGCCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTTGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTTGTGCGGAACAGAAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGCGACAAAATGCTGGAGCAGCTCGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACGCCGCATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAAGTGTTTGTGGATGATGAGACCAAGCTCACGCTACACGGACTGCAGCAGCACTACGTCAAACTCAGAGACAGCGAGAAGAACCGGAAGCTCTTCGACCTCCTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTAGCCCAGCTCCTCGTGGAACAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATTGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAACCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAGCTTCCAGAGGAAATTGACATCTCCACATACATTGAGCAGAGCCGGTAACCCCCACGTGCCCTGCCAGTCCAGAGCCGCCAACCTGGAGCCTCCCGCACGCAGCTCCACCACCTCTTTCCAGACGCCCCTGTTCAGAAGCTGTAGATTGTATAAGAATAAACGTG-TATTATGGAAGCCTGGTTCCCACACCATCT</Hsp_hseq>
+ <Hsp_midline>|||| |||||| |||||||||||||| ||| |||||| |||||| |||||| || ||||||||| ||||| |||| ||||||| |||| |||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||| ||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||| |||||| |||||| |||| || |||||||| |||| ||||| ||||||| ||||||||| ||||||||| || |||||||||||||||| |||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>8</Hit_num>
+ <Hit_id>gi|301601638|ref|NM_001193491.1|</Hit_id>
+ <Hit_def>Macaca mulatta DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>NM_001193491</Hit_accession>
+ <Hit_len>1300</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2259.1</Hsp_bit-score>
+ <Hsp_score>2504</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>115</Hsp_query-from>
+ <Hsp_query-to>1414</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1300</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1281</Hsp_identity>
+ <Hsp_positive>1281</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1300</Hsp_align-len>
+ <Hsp_qseq>CATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCC</Hsp_qseq>
+ <Hsp_hseq>CATCATGGCAGAACAGGATGTGGAAAATGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCACGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAAGCCAAGTCTGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTTAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGGGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAACAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCCTGGACGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTATGACATGCCTGAGGACTCGGACACTTACTTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATTGACATATCCACATACATTGAGCAGAGCCGGTAACCACCACGTGCC</Hsp_hseq>
+ <Hsp_midline>||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>9</Hit_num>
+ <Hit_id>gi|441628855|ref|XM_003275677.2|</Hit_id>
+ <Hit_def>PREDICTED: Nomascus leucogenys DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003275677</Hit_accession>
+ <Hit_len>1783</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>2212.22</Hsp_bit-score>
+ <Hsp_score>2452</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>112</Hsp_query-from>
+ <Hsp_query-to>1539</Hsp_query-to>
+ <Hsp_hit-from>220</Hsp_hit-from>
+ <Hsp_hit-to>1638</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1345</Hsp_identity>
+ <Hsp_positive>1345</Hsp_positive>
+ <Hsp_gaps>13</Hsp_gaps>
+ <Hsp_align-len>1430</Hsp_align-len>
+ <Hsp_qseq>CAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGG--TGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_qseq>
+ <Hsp_hseq>CAGCGTCATGGCAGAACAGGATGTGGAAAATGATCTTTTGGATTATGATGAAGAAGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGTTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCGATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGTATGGGCAAGACGGCGGTCTTCGTGTTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACAAGGGAGCTGGCCTTCCAGATCAGCAAAGAATATGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGT----GAGCCCCTCGGGCTGGACTGGACC------AGG-TGCCGCTTGGTTTCTGCAGCTTTGTTANNNNNNNNNNNNNNNNNNNNNNNNCCGCATCCTGGCACTCGTGCGAAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCCTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTTAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATTGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATAGACATCTCCACATACATTGAGCAGAGCCGGTAACCACCATGTGCCAGAGCCGCCCACCTGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTCGCTCCCACCCCATCT</Hsp_hseq>
+ <Hsp_midline>|||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | | | |||| ||| || | ||| || | ||| | || ||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>10</Hit_num>
+ <Hit_id>gi|478537026|ref|XM_004442573.1|</Hit_id>
+ <Hit_def>PREDICTED: Ceratotherium simum simum DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004442573</Hit_accession>
+ <Hit_len>1548</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1921.87</Hsp_bit-score>
+ <Hsp_score>2130</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1404</Hsp_query-to>
+ <Hsp_hit-from>18</Hsp_hit-from>
+ <Hsp_hit-to>1419</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1270</Hsp_identity>
+ <Hsp_positive>1270</Hsp_positive>
+ <Hsp_gaps>2</Hsp_gaps>
+ <Hsp_align-len>1404</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACC</Hsp_qseq>
+ <Hsp_hseq>AGCCGCAGTCGGACGCCAG-GGCCGGAAGCGCGGCAGCTTGGGTCGAAGCGCGCGACCGGTAACTGGAGCCGGCGGC-TGTCCTCGCAGCACGCGGAGGCGAACGGGGAACCAGCACCATGGCCGAACAGGACGTGGAGAACGAGCTTCTGGATTACGAGGAAGATGAAGAGCCCCAGGCTCCTCCCGAGAGCTCACCAGCTCCCCCCAAGAAAGACGTCAAGGGTTCCTACGTTTCCATCCACAGTTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTGCTGCGGGCCATAGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCACGAGTGCATTCCCCAAGCGATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGTAAGACGGCGGTCTTCGTGCTGGCCACCCTGCAGCAGATTGAGCCCGTCAACGGACAGGTGACGGTCCTCGTCATGTGCCACACTCGGGAGCTGGCCTTCCAGATCAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCCGTGTTCTTCGGGGGCCTCTCCATCAAGAAGGACGAAGACGTGTTGAAGAAGAGCTGTCCCCACGTGGTAGTGGGGACACCAGGCCGGATCCTGGCGCTTGTGCGCAACAGGAGCCTCAACCTGAGGAACGTGAAGCACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACGCCCCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCCGGCCCGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTGGACGACGAGACGAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTGAAGCTCAAGGACAGCGAGAAGAACCGCAAGCTCTTCGACCTCCTGGACGTGCTGGAGTTTAACCAGGTGGTGATCTTTGTGAAGTCCGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACAGGGGTATGGCCCAGGAGGAGCGCCTCTCACGCTACCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTGGTGGCTACCAACCTGTTTGGCCGAGGGATGGACATCGAGCGCGTTAACATCGTCTTCAACTACGACATGCCCGAGGACTCCGACACCTATCTCCACCGGGTGGCCCGTGCGGGTCGCTTTGGCACCAAAGGCCTGGCCATCACTTTCGTGTCTGACGAGAACGATGCCAGAATCCTCAATGACGTCCAGGACCGGTTTGAAGTGAACGTGGCGGAGCTTCCGGAAGAAATCGACATCTCCACGTACATCGAGCAGAGCCGGTAACC</Hsp_hseq>
+ <Hsp_midline>||| |||| | ||||| || ||| |||||||| ||| || | ||| ||||| || | | ||| | || || | | || | ||||| ||||||| ||||||||| |||||| |||||| |||||||| ||||| ||||| ||| |||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||| ||||||||| || || |||||||| || ||||| ||||||||||| ||||| || |||||| ||| ||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| || ||| |||| ||||||||||||||||||||| | ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||| || ||||| || ||||||||||||||||| |||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>11</Hit_num>
+ <Hit_id>gi|472358840|ref|XM_004398985.1|</Hit_id>
+ <Hit_def>PREDICTED: Odobenus rosmarus divergens DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004398985</Hit_accession>
+ <Hit_len>1549</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1882.2</Hsp_bit-score>
+ <Hsp_score>2086</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>12</Hsp_hit-from>
+ <Hsp_hit-to>1417</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1263</Hsp_identity>
+ <Hsp_positive>1263</Hsp_positive>
+ <Hsp_gaps>2</Hsp_gaps>
+ <Hsp_align-len>1407</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAG-CGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>AGCCGCAGTCCGACGTAGGAGGCAGGAAGCGCTGCAGCTCTTGT-TGAGGCGCGCGACCGGTAACCAGAGTCGGACGGAGCACCTCGCAGCACGCGGCGGCGAACGGGGAACCAGCACCATGGCGGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCAGAGAGCACTCCTGCTCCCCCCAAGAAAGACGTCAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTAAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTTGAGCATCCATCTGAGGTCCAGCACGAGTGTATTCCCCAAGCCATCCTGGGCATGGATGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCAGTCTTCGTGCTGGCTACCCTGCAGCAGATCGAGCCAGTCAACGGACAGGTGACAGTCCTGGTCATGTGCCATACGCGGGAGCTCGCCTTCCAGATCAGCAAAGAGTACGAACGCTTCTCCAAGTACATGCCCAGTGTCAAGGTGTCCGTGTTCTTTGGGGGCCTTTCCATCAAGAAAGATGAAGAGGTATTGAAGAAGAACTGTCCCCATGTCGTAGTGGGGACACCAGGGCGGATCCTGGCACTAGTGCGGAACAGGAGCCTGAACCTGAAGAACGTGAAGCACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGTCTGACACCCCATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCAGGCCTGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTAGACGATGAGACCAAGCTCACACTGCACGGACTGCAACAGTACTACGTCAAGCTTAAGGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGTTGGAGTTTAACCAGGTGGTGATCTTCGTGAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCTATCCACAGGGGCATGGCCCAGGAGGAGCGTCTGTCACGTTATCAGCAGTTTAAAGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATCGTCTTCAACTATGACATGCCCGAGGACTCGGACACCTACCTCCACCGAGTGGCCCGTGCAGGTCGCTTTGGGACCAAAGGTCTGGCTATCACTTTTGTATCTGACGAGAACGATGCCAAAATCCTCAATGACGTTCAGGACAGGTTTGAAGTGAACGTGGCAGAACTTCCTGAAGAAATCGACATTTCCACGTATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||| |||| |||||| | |||||||||||||| ||| ||| ||| |||| ||| || | | |||| ||| ||| | | | | ||||| ||||| | ||||||||| |||||| |||||| ||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| ||||||||| || |||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||| || || || ||||| ||||||||||||||||| ||||||||||| |||||||| || || || ||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| || || || |||||||| || |||||||| |||||| | | ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||| || |||||||||||||| || ||||||||||| ||||| || || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>12</Hit_num>
+ <Hit_id>gi|410950597|ref|XM_003981942.1|</Hit_id>
+ <Hit_def>PREDICTED: Felis catus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003981942</Hit_accession>
+ <Hit_len>1461</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1876.79</Hsp_bit-score>
+ <Hsp_score>2080</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>87</Hsp_query-from>
+ <Hsp_query-to>1471</Hsp_query-to>
+ <Hsp_hit-from>14</Hsp_hit-from>
+ <Hsp_hit-to>1397</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1251</Hsp_identity>
+ <Hsp_positive>1251</Hsp_positive>
+ <Hsp_gaps>11</Hsp_gaps>
+ <Hsp_align-len>1390</Hsp_align-len>
+ <Hsp_qseq>CAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC-CACGT----GCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCA</Hsp_qseq>
+ <Hsp_hseq>CAGCGCGCGGAGGCGAACGGGGAACCAGCGCCATGGCGGAACAGGATGTGGAAAATGAGCTTCTGGATTACGAGGAAGATGAAGAGCCCCAGGCTCCTCCGGAGAGCACTCCTGCTCCCCCCAAGAAAGACGTCAAGGGTTCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTTTGCTGAAGCCGGAGCTTCTTAGGGCCATCGTGGACTGTGGCTTTGAGCATCCATCTGAGGTCCAGCACGAGTGTATTCCCCAAGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCCGTCTTCGTGCTGGCCACCCTGCAGCAGATTGAGCCTGTCAACGGACAGGTGACAGTGCTGGTCATGTGTCATACTCGGGAGCTGGCATTCCAGATTAGCAAGGAATATGAACGCTTCTCCAAATACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGGGGCCTTTCCATCAAGAAGGATGAAGAGGTATTGAAGAAGAACTGTCCGCACGTCGTGGTGGGGACACCAGGCCGGATCCTGGCACTCGTACGGAACAGGAGCCTCAACCTGAAGAACGTGAAGCACTTCGTGCTGGACGAGTGCGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACGCCCCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCAGGCCCGTGTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTAGACGATGAGACCAAGCTCACGCTACACGGACTCCAGCAGTACTACGTCAAGCTCAAGGACAGCGAGAAGAACCGCAAGCTGTTTGATCTCTTGGACGTGCTGGAGTTTAACCAGGTGGTGATCTTCGTGAAGTCGGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTTGTGGAGCAGAACTTCCCGGCCATCGCTATCCACAGGGGCATGGCGCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAAGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGTCGAGGGATGGACATTGAGCGAGTCAACATCGTCTTCAACTATGACATGCCCGAGGACTCGGACACCTACCTCCACCGAGTGGCCCGTGCGGGACGTTTTGGGACCAAAGGTCTGGCCATCACTTTTGTGTCCGATGAGAATGATGCCAAAATCCTCAATGACGTTCAGGACAGGTTTGAAGTGAACGTGGCAGAACTTCCTGAAGAAATTGACATCTCTACATACATTGAGCAGAGCCGGTAACCACACGCCTGGTGGCCAGAGTCGCCC------TGTCTCCTGAGTGCTGCTTCAAGTCCTCTTTCTAGGCACCA</Hsp_hseq>
+ <Hsp_midline>|||||||||||| ||||||||| ||||| |||||| ||||||||||||||||| || ||| |||||||||| ||||| ||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || || |||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||| || |||||||||||||| || ||||| |||||||| ||||| ||||| |||||| ||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||| || ||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||| || |||||||||||||| || ||||| |||||||| |||||||| ||||||||||||||||||| | | | ||||||| ||||| | | || | ||| |||||| ||| ||||| |||| |||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>13</Hit_num>
+ <Hit_id>gi|395850754|ref|XM_003797893.1|</Hit_id>
+ <Hit_def>PREDICTED: Otolemur garnettii DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003797893</Hit_accession>
+ <Hit_len>1318</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1876.79</Hsp_bit-score>
+ <Hsp_score>2080</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>113</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>29</Hsp_hit-from>
+ <Hsp_hit-to>1318</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1190</Hsp_identity>
+ <Hsp_positive>1190</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1290</Hsp_align-len>
+ <Hsp_qseq>AGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>AGCATCATGGCAGAGCAGGATGTAGAAAATGAACTTTTGGATTATGAGGAAGATGAAGAACCCCAGGCTCCTCCGGAGAGCACTCCAGCTCCCCCTAAAAAAGACGTCAAGGGATCCTACGTTTCCATCCATAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGGGCCATTGTGGACTGTGGCTTTGAGCATCCATCAGAGGTCCAACACGAGTGCATTCCACAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGAATGGGCAAGACAGCAGTTTTTGTGCTGGCCACCCTGCAGCAGATCGAGCCTGTCAACGGACAGGTGACAGTCTTGGTCATGTGCCATACAAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCTAAGTACATGCCCAGTGTCAAGGTGTCTGTCTTCTTCGGTGGCCTCTCCATCAAGAAAGATGAAGAAGTATTGAAGAAAAACTGTCCCCATGTTGTGGTGGGGACCCCAGGCCGGATCTTGGCCCTTGTGCGGAACAGGAGCCTCAACCTGAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAACAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACGCCCCATGAGAAGCAGTGCATGATGTTCAGTGCCACCCTGAGCAAAGAGATCCGCCCTGTCTGCAGGAAGTTCATGCAGGATCCAATGGAGGTGTTTGTGGATGACGAGACCAAGCTCACACTGCATGGGCTACAGCAGTACTATGTCAAGCTCAAGGATAGCGAGAAGAACCGCAAACTCTTTGATCTCTTGGATGTGCTAGAGTTTAACCAGGTGGTCATCTTTGTCAAGTCTGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTAGAACAGAACTTCCCAGCCATTGCCATCCACCGGGGTATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGATATTGAGCGAGTCAACATCGTCTTCAATTATGACATGCCTGAGGACTCTGACACCTACCTCCACCGGGTGGCCAGGGCGGGTCGCTTCGGCACCAAAGGCCTGGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGATGTTCAGGACCGGTTTGAGGTGAATGTGGCAGAACTTCCAGAGGAAATTGATATCTCCACATACATTGAACAGAGCCGGTAA</Hsp_hseq>
+ <Hsp_midline>|||||||||||||| |||||||| ||||| || ||||||||||| || ||||| ||||| ||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| || |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||| |||| || |||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || || ||||||||||| ||||| ||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>14</Hit_num>
+ <Hit_id>gi|511847827|ref|XM_004748233.1|</Hit_id>
+ <Hit_def>PREDICTED: Mustela putorius furo DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant X3, mRNA >gi|512013622|ref|XM_004824105.1| PREDICTED: Mustela putorius furo DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant X3, mRNA</Hit_def>
+ <Hit_accession>XM_004748233</Hit_accession>
+ <Hit_len>1505</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1873.18</Hsp_bit-score>
+ <Hsp_score>2076</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>17</Hsp_hit-from>
+ <Hsp_hit-to>1422</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1259</Hsp_identity>
+ <Hsp_positive>1259</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1406</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>AGCCGCAGTCGGACGTAAGAGGCAGGAAGCCCTACAGCTCGTGCTGGGGCGCGAGACGGGTAACCGGAGTCGGACGGCACTTCTCGGAGCACGCGGAGGCGAACGGGGTGCCAGCAGCATGGCGGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCGGAGAGCACTCCTGCTCCCCCCAAGAAAGACGTCAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTCGAGCATCCATCCGAGGTCCAGCACGAGTGTATTCCGCAAGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCGGTCTTCGTGTTGGCCACCCTGCAGCAGATTGAGCCAGTCAGCGGACAGGTTTCAGTCCTGGTCATGTGCCACACGCGGGAGCTCGCCTTCCAGATCAGCAAAGAGTATGAACGCTTCTCCAAGTACATGCCCAGTGTCAAGGTGTCTGTGTTCTTCGGGGGCCTTTCCATCAAGAAGGATGAAGAAATACTGAAGAAGAACTGTCCCCATGTCGTAGTGGGGACACCAGGCCGAATCCTGGCACTAGTGCGGAACAGGAGCCTGAACCTGAAGAACGTGAAACACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAACTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGGCTGACGCCTCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCAGGCCTGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTGGATGATGAGACCAAGCTCACGCTACACGGACTGCAGCAGTACTATGTCAAGCTCAAGGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGTTGGAGTTTAACCAGGTGGTGATCTTCGTGAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTTGTGGAACAGAACTTCCCGGCCATCGCTATCCACAGGGGCATGGCCCAGGAGGAGCGTCTGTCGCGCTATCAGCAGTTCAAAGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATCGTCTTCAACTACGACATGCCCGAGGACTCAGACACCTACCTCCACCGAGTGGCCCGTGCAGGTCGCTTTGGGACCAAAGGTCTGGCTATCACTTTTGTATCTGATGAGAATGATGCCAAAATCCTCAATGACGTTCAGGACAGGTTTGAGGTGAACGTGGCCGAACTTCCTGAAGAAATCGACATCTCCACATATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||| |||| | |||| |||||||||||||| | || |||||| | |||| | ||| ||||| ||| ||| | || | | ||| ||||||| |||||||| ||||||| |||||| ||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||| | | ||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>15</Hit_num>
+ <Hit_id>gi|466046657|ref|XM_004277418.1|</Hit_id>
+ <Hit_def>PREDICTED: Orcinus orca DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004277418</Hit_accession>
+ <Hit_len>1555</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1869.58</Hsp_bit-score>
+ <Hsp_score>2072</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1405</Hsp_query-to>
+ <Hsp_hit-from>19</Hsp_hit-from>
+ <Hsp_hit-to>1423</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1260</Hsp_identity>
+ <Hsp_positive>1260</Hsp_positive>
+ <Hsp_gaps>4</Hsp_gaps>
+ <Hsp_align-len>1407</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTC--TCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCA</Hsp_qseq>
+ <Hsp_hseq>AGCCGCAGTCGGACCCACGAGACAGGAAACGCGATAGCTTGTGTCAAGGCGCGCGACCGGTAACAGGAGTCGG--GTGGCGGTCCTCGCAGCACGCGGAGGTGAACGAGGAATCAGCACCATGGCGGAACAGGATGTGGAAAACGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCAGAGAGCGCTCCAACTGCTCCCAAGAAAGATGTCAAGGGTTCTTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCTGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTCGAGCATCCATCCGAGGTCCAGCACGAGTGTATTCCACAAGCCATCCTGGGCATGGACATCCTGTGCCAGGCCAAGTCAGGGATGGGCAAGACAGCGGTTTTTGTGTTGGCCACCCTGCAGCAGATTGAGCCCGTCAACGGACAGGTGACGGTCCTGGTTATGTGCCACACTCGAGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAATACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGGGGCCTGTCCATCAAGAAGGACGAGGAGGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACGCCGGGCCGGATCCTGGCGCTTGTGCGGAACAGGAGCCTCAACCTGAAGAATGTGAAGCACTTCGTGTTGGACGAGTGCGACAAGATGCTGGAGCAGTTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACACCCCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCCGGCCCGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTGGACGACGAAACCAAGCTCACGCTGCATGGGCTGCAGCAGTACTACGTCAAACTTAAGGACAGTGAGAAGAACCGCAAGCTCTTTGACCTCCTGGATGTGTTGGAGTTTAACCAGGTGGTGATATTTGTGAAGTCGGTGCAGCGCTGCATGGCCTTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCAGCCATTGCCATCCACAGGGGCATGGCCCAGGAGGAGCGCCTGTCACGTTATCAGCAGTTTAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGAATGGACATTGAGCGTGTCAACATTGTCTTCAATTATGACATGCCCGAGGACTCAGACACCTACCTCCACCGCGTGGCCCGTGCGGGTCGCTTTGGTACCAAAGGCCTGGCCATTACTTTCGTGTCTGATGAGAATGATGCCAAAATCCTCAATGATGTCCAGGACCGGTTTGAAGTGAATGTGGCAGAGCTTCCAGAAGAAATAGACATCTCCACATACATTGAGCAGAGCCGGTAACCA</Hsp_hseq>
+ <Hsp_midline>||| |||| | ||| || ||| |||||| ||| | || ||||| |||| || | | ||| | ||| || ||| | || | ||||| ||||||| ||||| ||| ||||| |||||| |||||||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||| ||||||| | ||| || | || |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| ||| ||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| | || || || ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||| ||||| || || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>16</Hit_num>
+ <Hit_id>gi|470600673|ref|XM_004312273.1|</Hit_id>
+ <Hit_def>PREDICTED: Tursiops truncatus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004312273</Hit_accession>
+ <Hit_len>1555</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1867.77</Hsp_bit-score>
+ <Hsp_score>2070</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>19</Hsp_hit-from>
+ <Hsp_hit-to>1424</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1260</Hsp_identity>
+ <Hsp_positive>1260</Hsp_positive>
+ <Hsp_gaps>4</Hsp_gaps>
+ <Hsp_align-len>1408</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTC--TCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>AGCCGCAGTCGGACCCACGAGACAGGAAACGCGATAGCTTGTGTCAAGGCGCGCGACCGGTAACAGGAGTCGG--GTGGCGGTCCTCGCAGCACGCGGTGGTGAACGAGGAATCAGCACCATGGCGGAACAGGATGTGGAAAACGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCAGAGAGCGCTCCAACTGCTCCCAAGAAAGATGTCAAGGGTTCTTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCTGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTCGAGCATCCATCCGAGGTCCAGCACGAGTGTATTCCACAAGCCATCCTGGGCATGGACATCCTGTGCCAGGCCAAGTCAGGGATGGGCAAGACAGCGGTTTTTGTGTTGGCCACCCTGCAGCAGATTGAGCCCGTCAACGGACAGGTGACGGTCCTGGTTATGTGCCACACTCGAGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAATACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGGGGCCTGTCCATCAAGAAGGACGAGGAGGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACGCCGGGCCGGATCCTGGCGCTTGTGCGGAACAGGAGCCTCAACCTGAAGAATGTGAAGCACTTCGTGTTGGACGAGTGCGACAAGATGCTGGAGCAGTTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACACCCCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCCGGCCCGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTGGACGACGAAACCAAGCTCACGCTGCATGGGCTGCAGCAGTACTACGTCAAACTTAAGGACAGTGAGAAGAACCGCAAGCTCTTTGACCTCCTGGATGTGTTGGAGTTTAACCAGGTGGTGATATTTGTGAAGTCGGTGCAGCGCTGCATGGCCTTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCAGCCATTGCCATCCACAGGGGCATGGCCCAGGAGGAGCGCCTGTCACGTTATCAGCAGTTTAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGAATGGACATTGAGCGTGTCAACATTGTCTTCAATTATGACATGCCCGAGGACTCAGACACCTACCTCCACCGCGTGGCCCGTGCGGGTCGCTTTGGTACCAAAGGCCTGGCCATTACTTTCGTGTCTGATGAGAATGATGCCAAAATCCTCAATGATGTCCAGGACCGGTTTGAAGTGAATGTGGCAGAGCTTCCAGAAGAAATAGACATCTCCACATACATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||| |||| | ||| || ||| |||||| ||| | || ||||| |||| || | | ||| | ||| || ||| | || | ||||| ||||| | ||||| ||| ||||| |||||| |||||||||||||||||||| ||| ||||||| || ||||| ||||||||||||||||||| ||||||| | ||| || | || |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| ||| ||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| | || || || ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||| ||||| || || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>17</Hit_num>
+ <Hit_id>gi|301771295|ref|XM_002920972.1|</Hit_id>
+ <Hit_def>PREDICTED: Ailuropoda melanoleuca ATP-dependent RNA helicase DDX39-like (LOC100469174), mRNA</Hit_def>
+ <Hit_accession>XM_002920972</Hit_accession>
+ <Hit_len>1484</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1858.76</Hsp_bit-score>
+ <Hsp_score>2060</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>62</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>9</Hsp_hit-from>
+ <Hsp_hit-to>1353</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1219</Hsp_identity>
+ <Hsp_positive>1219</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1345</Hsp_align-len>
+ <Hsp_qseq>AACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>AACCGGAGTCGGACGGCTGTCCTCGCAGCACGCGGAGGCGAGCGGCTAACCAGCACCATGGCAGAACAAGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCAGAGAGCACTCCTGCTGCCCCCAAGAAAGATGTCAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTTGAGCATCCATCTGAGGTCCAGCACGAGTGTATTCCCCAAGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCGGTCTTCGTGCTGGCCACCCTGCAGCAGATTGAGCCGGTCAACGGACAGGTGACAGTCCTGGTCATGTGTCATACGCGGGAGCTCGCCTTCCAGATCAGCAAAGAATATGAACGCTTCTCCAAGTACATGCCCAGTGTCAAGGTGTCCGTGTTCTTTGGGGGCCTTTCCATCAAGAAGGATGAAGAAGTATTGAAGAAGAACTGTCCCCATGTCGTAGTGGGGACACCAGGCCGAATCCTGGCACTAGTGCGAAACCGGAGCCTGAACCTGAAGAACGTGAAGCACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGTCTGACGCCCCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCAGGCCGGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTAGATGATGAGACCAAGCTCACGCTGCACGGACTGCAGCAGTACTACGTCAAACTCAAGGACAGCGAGAAGAACCGCAAGCTCTTCGATCTCTTGGATGTGTTGGAGTTTAACCAGGTGGTGATCTTCGTGAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCTGCCATCGCTATCCACAGGGGCATGGCCCAGGAGGAGCGTCTGTCACGCTATCAGCAATTCAAAGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATCGTTTTCAACTATGACATGCCCGAGGACTCGGACACCTACCTCCACCGAGTGGCCCGTGCAGGTCGCTTTGGGACCAAAGGTCTGGCTATCACTTTTGTATCTGATGAGAATGATGCCAAAATCCTCAATGACGTTCAGGACAGGTTTGAAGTGAACGTGGCAGAACTTCCTGAAGAAATTGACATCTCCACATATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||||| ||| ||| | | || | ||||| ||||||| || ||| | |||||| |||||||||||| ||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| ||||||||| || ||| |||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || ||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || || || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||||||| || ||||| || ||||| | | ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||| || |||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>18</Hit_num>
+ <Hit_id>gi|345787717|ref|XM_533895.3|</Hit_id>
+ <Hit_def>PREDICTED: Canis lupus familiaris DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_533895</Hit_accession>
+ <Hit_len>1449</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1835.31</Hsp_bit-score>
+ <Hsp_score>2034</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>92</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>2</Hsp_hit-from>
+ <Hsp_hit-to>1316</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1196</Hsp_identity>
+ <Hsp_positive>1196</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1315</Hsp_align-len>
+ <Hsp_qseq>CGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>CGCGGAGGCGAACGGGGAAGCAGCACCATGGCAGAACAAGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCAGAGAGCACTCCTGCTCCCCCCAAGAAAGATGTCAAGGGTTCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTTGAGCATCCATCTGAGGTCCAGCACGAGTGTATTCCCCAAGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACTGCGGTCTTCGTACTGGCCACCCTGCAGCAGATTGAGCCAGTTAATGGACAGGTGACAGTCTTGGTCATGTGCCACACACGGGAGCTAGCCTTCCAGATCAGCAAAGAGTATGAACGCTTCTCCAAGTACATGCCCAGTGTCAAGGTGTCTGTGTTCTTTGGGGGCCTTTCTATCAAGAAGGATGAAGAGGTATTGAAGAAGAACTGTCCTCATGTCGTGGTGGGGACACCAGGCCGGATCCTGGCGCTAGTGCGGAACCGGAGCCTGAACCTGAAGAACGTGAAGCACTTCGTGCTGGATGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCTTGACACCCCATGAGAAGCAGTGCATGATGTTTAGCGCCACCCTGAGCAAGGAGATCAGGCCGGTCTGCAGGAAGTTCATGCAAGATCCCATGGAGGTGTTTGTAGACGACGAGACCAAGCTCACACTGCATGGACTGCAGCAGTACTACGTCAAGCTCAAGGACAGTGAGAAGAACCGCAAGCTCTTCGACCTGTTGGATGTGTTGGAGTTTAACCAGGTGGTGATCTTTGTGAAGTCCGTGCAACGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATTGCCATCCACAGGGGCATGGCCCAGGAGGAGCGTCTGTCGCGCTATCAGCAGTTCAAAGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATCGTCTTCAACTATGACATGCCTGAGGACTCGGACACCTACCTCCACCGAGTGGCCCGTGCAGGTCGCTTTGGGACTAAAGGTCTGGCTATTACTTTCGTGTCTGACGAGAATGATGCAAAAATCCTCAATGACGTTCAGGACCGGTTTGAAGTGAATGTGGCAGAACTTCCTGAAGAAATTGACATCTCCACGTATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||||||| ||||||||| ||||| |||||||||||| ||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || || ||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || || || || ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||| ||||| | | ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||| | ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| || ||||| || || || ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| || || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>19</Hit_num>
+ <Hit_id>gi|344283234|ref|XM_003413330.1|</Hit_id>
+ <Hit_def>PREDICTED: Loxodonta africana ATP-dependent RNA helicase DDX39A-like (LOC100675770), mRNA</Hit_def>
+ <Hit_accession>XM_003413330</Hit_accession>
+ <Hit_len>1284</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1833.51</Hsp_bit-score>
+ <Hsp_score>2032</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>119</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1284</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1177</Hsp_identity>
+ <Hsp_positive>1177</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1284</Hsp_align-len>
+ <Hsp_qseq>ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>ATGGCAGAACAGGATGTGGAAAACGAGCTTCTGGATTACGAGGAAGATGAAGAGCCCCAGGCGCCTCCAGAGAGCACTCCAGCTCCATCCAAGAAAGATGTCAAGGGTTCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTAAAGCCAGAGCTACTGAGGGCCATTGTGGACTGTGGCTTTGAGCACCCATCTGAGGTCCAGCACGAGTGTATCCCCCAAGCCATCCTGGGGATGGACGTCCTGTGCCAAGCCAAGTCTGGAATGGGCAAGACAGCGGGTTTCGTGCTGGCCACCCTGCAGCAGATCGAGCCCGTCAATGGACAGGTGACGGTCCTGGTCATGTGCCATACTCGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTCTCCAAGTACATGCCTAATGTGAAGGTGTCGGTGTTCTTCGGTGGCCTCTCCATCAAGAAGGATGAAGAAGTGCTGAAGAAGAATTGTCCACATGTGGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTTGTGCGGAACAGGAGCCTCAACCTGAAGAATGTGAAGCACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGACGTGCAGGAAATCTTCCGCCTGACACCCCATGAGAAGCAGTGCATGATGTTCAGCGCTACCCTGAACAAGGAGATCCGGCCTGTCTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGATGATGAGACCAAGCTCACGCTGCATGGACTGCAGCAGTACTATGTCAAGCTCAAGGACAGCGAGAAGAACCGCAAACTCTTCGATCTCCTGGATGTGCTGGAGTTTAACCAGGTGGTGATCTTTGTGAAGTCGGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCAGCTATTGCCATCCACCGGGGCATGGCCCAGGAGGAACGCTTGTCACGATATCAGCAGTTCAAGGATTTCCAGCGGCGCATCCTCGTGGCCACCAATCTGTTCGGCCGAGGGATGGACATTGAGCGAGTCAACATCGTCTTCAACTACGACATGCCAGAGGACTCAGACACCTACCTCCACCGGGTGGCCCGTGCAGGTCGCTTTGGCACCAAAGGCCTTGCCATCACTTTTGTGTCTGACGAGAACGATGCCAAGATCCTCAACGACGTCCAGGACCGGTTTGAAGTGAATGTGGCAGAGCTTCCAGAAGAAATTGATATTTCCACATACATTGAACAGAGCCGGTAA</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||| |||| ||||||||| |||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||| |||||||||||||||||||| || |||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| || ||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>20</Hit_num>
+ <Hit_id>gi|471416597|ref|XM_004389765.1|</Hit_id>
+ <Hit_def>PREDICTED: Trichechus manatus latirostris DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004389765</Hit_accession>
+ <Hit_len>1318</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1828.1</Hsp_bit-score>
+ <Hsp_score>2026</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>85</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1318</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1196</Hsp_identity>
+ <Hsp_positive>1196</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1318</Hsp_align-len>
+ <Hsp_qseq>AGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>AGCAGCACGCGGATTTGAACCGAGAATCAGCACTATGGCGGAACAGGATGTGGAAAACGAGCTTCTGGATTATGAAGAAGATGAAGAGCCCCAGCCTCCTCCCGAGAGCACTCCAGCTCCCTCCAAGAAAGACGTCAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTAAAGCCAGAGCTACTAAGGGCCATCGTGGACTGTGGCTTTGAGCACCCATCTGAGGTCCAGCACGAGTGTATCCCCCAAGCCATCCTGGGGATGGATGTCCTGTGCCAAGCCAAGTCTGGGATGGGCAAGACGGCGGTCTTTGTGCTGGCCACCCTGCAGCAGATCGAGCCCGTCAACGGACAGGTGACAGTCTTGGTTATGTGCCACACTCGGGAGCTGGCCTTCCAGATCAGCAAAGAGTATGAGCGCTTCTCCAAGTACATGCCCAATGTCAAGGTGTCTGTGTTCTTTGGTGGCCTTTCCATCAAGAAGGATGAAGAGGTGCTGAAGAAGAACTGTCCGCACGTTGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTTGTGCGAAACAGGAGCCTCAACCTGAAGAATGTGAAGCACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGATATGCGGCGGGATGTGCAGGAGATATTCCGCCTGACGCCCCACGAGAAGCAGTGCATGATGTTCAGTGCCACCCTGAACAAGGAGATCCGGCCCGTCTGCAGGAAGTTCATGCAAGATCCCATGGAGGTGTTTGTGGACGATGAGACCAAGCTCACGTTGCACGGACTGCAGCAGTACTACGTCAAGCTCAAGGACAGCGAGAAGAACCGCAAGCTCTTTGACCTCCTGGACGTGCTGGAGTTTAACCAGGTGGTGATCTTTGTGAAGTCGGTGCAGCGCTGCATGGCCTTGGCCCAGCTCCTCGTGGAACAGAACTTCCCAGCCATTGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCTTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGCATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGGGTCAACATCGTCTTCAACTATGACATGCCTGAGGACTCAGATACTTACCTCCACCGGGTGGCCCGCGCGGGTCGCTTTGGCACCAAAGGCCTAGCTATCACTTTTGTGTCTGATGAGAACGATGCCAAAATTCTCAATGACGTTCAGGACCGGTTTGAAGTGAATGTGGCAGAGCTTCCAGAAGAAATTGACATATCTACATACATTGAGCAGAGCCGGTAA</Hsp_hseq>
+ <Hsp_midline>|||||| |||||| |||| | || ||||| ||||| |||||||||||||||||||| ||| ||||||| || ||||| |||||||||||| |||||| |||||||| ||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||| || |||||||||||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||| ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| || |||||| ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| | ||||| || ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || |||||||| |||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>21</Hit_num>
+ <Hit_id>gi|426228875|ref|XM_004008473.1|</Hit_id>
+ <Hit_def>PREDICTED: Ovis aries DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004008473</Hit_accession>
+ <Hit_len>1520</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1819.08</Hsp_bit-score>
+ <Hsp_score>2016</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>19</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1387</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1238</Hsp_identity>
+ <Hsp_positive>1238</Hsp_positive>
+ <Hsp_gaps>3</Hsp_gaps>
+ <Hsp_align-len>1389</Hsp_align-len>
+ <Hsp_qseq>GAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTG-TCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>GAGGCAGGAAGCGCAACAGCGCGTGTCGGGGCGCGAGAACGGTAACCGGAGCCGG--GTGCTCTCTTCGCAGCACGGGGAAGCGAACGAGGAATCAGTAGCATGGCGGAACAGGATGTGGAAAACGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCACCTCCAGAGAGCGCTCCACCTCCCCCCAAGAAAGACGTTAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGTTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTTGAGCATCCATCAGAGGTCCAGCACGAGTGTATTCCGCAAGCCATCCTGGGCATGGACATCTTGTGCCAGGCCAAATCAGGGATGGGCAAGACAGCGGTTTTTGTGTTGGCCACTCTGCAGCAGATTGAGCCCGTCAACGGACAGGTGACGGTCCTGGTGATGTGCCACACTCGAGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAATACATGCCCAGCGTCAAGGTGTCTGTGTTCTTTGGGGGCCTGTCCATCAAGAAGGATGAGGAGGTGTTGAAGAGGAACTGTCCCCACGTAGTGGTGGGGACGCCGGGCCGGATCCTGGCACTTGTGCGCAATAGGAGCCTCAACCTGAAGAATGTGAAGCACTTCGTGTTGGATGAGTGCGACAAGATGCTGGAGCAGCTGGATATGCGGCGGGACGTGCAGGAAATCTTCCGCCTGACCCCCCACGAGAAGCAGTGCATGATGTTCAGCGCCACCTTGAGCAAGGAGATCCGACCTGTGTGCAGGAAGTTCATGCAAGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGGCTACAGCAGTACTACGTGAAACTCAAGGACAGTGAGAAGAACCGCAAGCTCTTCGACCTCCTGGATGTGTTGGAGTTTAACCAGGTTGTGATCTTTGTGAAGTCAGTGCAGCGCTGCATGGCCTTGGCCCAGCTCCTGGTGGAACAGAACTTCCCAGCTATTGCCATCCACAGGGGCATGGCTCAGGAGGAGCGCCTGTCGCGCTATCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTCGGCCGAGGGATGGACATTGAGCGCGTCAACATCGTCTTCAATTATGACATGCCTGAGGACTCAGACACCTACCTCCACCGTGTGGCCCGTGCGGGTCGCTTCGGTACCAAAGGCCTGGCCGTTACTTTCGTGTCTGACGAGAACGATGCCAAAATCCTCAATGATGTCCAGGACCGGTTTGAAGTGAACGTGGCAGAGCTTCCAGAAGAAATTGACATCTCCACATACATTGAGCAGAGCCGGTAGCCAC</Hsp_hseq>
+ <Hsp_midline>||||||||||||||| || | |||||| | |||| | | ||||| || || ||| |||||| ||||| || ||| ||||| ||| ||| | |||||| |||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||| |||| ||||||| | ||| ||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||||||||||||||| || ||||||||||||| || |||||||||||||||||||| || ||| ||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| || || || ||||||||||||||||| || |||||||||| |||||||||||| || ||||||||||| |||||||| |||||||| || ||||| ||||||||| ||| ||| ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||| | ||||| || |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| || || ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| || || ||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||||||||| ||| | ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>22</Hit_num>
+ <Hit_id>gi|511847823|ref|XM_004748231.1|</Hit_id>
+ <Hit_def>PREDICTED: Mustela putorius furo DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant X1, mRNA >gi|512013618|ref|XM_004824103.1| PREDICTED: Mustela putorius furo DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant X1, mRNA</Hit_def>
+ <Hit_accession>XM_004748231</Hit_accession>
+ <Hit_len>1756</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1808.26</Hsp_bit-score>
+ <Hsp_score>2004</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>110</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>378</Hsp_hit-from>
+ <Hsp_hit-to>1673</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1180</Hsp_identity>
+ <Hsp_positive>1180</Hsp_positive>
+ <Hsp_gaps>1</Hsp_gaps>
+ <Hsp_align-len>1297</Hsp_align-len>
+ <Hsp_qseq>GCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>GCCA-CAGCATGGCGGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCGGAGAGCACTCCTGCTCCCCCCAAGAAAGACGTCAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTCGAGCATCCATCCGAGGTCCAGCACGAGTGTATTCCGCAAGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCGGTCTTCGTGTTGGCCACCCTGCAGCAGATTGAGCCAGTCAGCGGACAGGTTTCAGTCCTGGTCATGTGCCACACGCGGGAGCTCGCCTTCCAGATCAGCAAAGAGTATGAACGCTTCTCCAAGTACATGCCCAGTGTCAAGGTGTCTGTGTTCTTCGGGGGCCTTTCCATCAAGAAGGATGAAGAAATACTGAAGAAGAACTGTCCCCATGTCGTAGTGGGGACACCAGGCCGAATCCTGGCACTAGTGCGGAACAGGAGCCTGAACCTGAAGAACGTGAAACACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAACTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGGCTGACGCCTCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCAGGCCTGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTGGATGATGAGACCAAGCTCACGCTACACGGACTGCAGCAGTACTATGTCAAGCTCAAGGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGTTGGAGTTTAACCAGGTGGTGATCTTCGTGAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTTGTGGAACAGAACTTCCCGGCCATCGCTATCCACAGGGGCATGGCCCAGGAGGAGCGTCTGTCGCGCTATCAGCAGTTCAAAGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATCGTCTTCAACTACGACATGCCCGAGGACTCAGACACCTACCTCCACCGAGTGGCCCGTGCAGGTCGCTTTGGGACCAAAGGTCTGGCTATCACTTTTGTATCTGATGAGAATGATGCCAAAATCCTCAATGACGTTCAGGACAGGTTTGAGGTGAACGTGGCCGAACTTCCTGAAGAAATCGACATCTCCACATATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>|||| || |||||| ||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||| | | ||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>23</Hit_num>
+ <Hit_id>gi|511847825|ref|XM_004748232.1|</Hit_id>
+ <Hit_def>PREDICTED: Mustela putorius furo DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant X2, mRNA >gi|512013620|ref|XM_004824104.1| PREDICTED: Mustela putorius furo DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant X2, mRNA</Hit_def>
+ <Hit_accession>XM_004748232</Hit_accession>
+ <Hit_len>1753</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1806.46</Hsp_bit-score>
+ <Hsp_score>2002</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>118</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>382</Hsp_hit-from>
+ <Hsp_hit-to>1670</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1174</Hsp_identity>
+ <Hsp_positive>1174</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1289</Hsp_align-len>
+ <Hsp_qseq>CATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>CATGGCGGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCGGAGAGCACTCCTGCTCCCCCCAAGAAAGACGTCAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTCGAGCATCCATCCGAGGTCCAGCACGAGTGTATTCCGCAAGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCGGTCTTCGTGTTGGCCACCCTGCAGCAGATTGAGCCAGTCAGCGGACAGGTTTCAGTCCTGGTCATGTGCCACACGCGGGAGCTCGCCTTCCAGATCAGCAAAGAGTATGAACGCTTCTCCAAGTACATGCCCAGTGTCAAGGTGTCTGTGTTCTTCGGGGGCCTTTCCATCAAGAAGGATGAAGAAATACTGAAGAAGAACTGTCCCCATGTCGTAGTGGGGACACCAGGCCGAATCCTGGCACTAGTGCGGAACAGGAGCCTGAACCTGAAGAACGTGAAACACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAACTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGGCTGACGCCTCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGAGATCAGGCCTGTCTGCAGGAAGTTCATGCAAGACCCCATGGAGGTGTTTGTGGATGATGAGACCAAGCTCACGCTACACGGACTGCAGCAGTACTATGTCAAGCTCAAGGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGTTGGAGTTTAACCAGGTGGTGATCTTCGTGAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTTGTGGAACAGAACTTCCCGGCCATCGCTATCCACAGGGGCATGGCCCAGGAGGAGCGTCTGTCGCGCTATCAGCAGTTCAAAGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATCGTCTTCAACTACGACATGCCCGAGGACTCAGACACCTACCTCCACCGAGTGGCCCGTGCAGGTCGCTTTGGGACCAAAGGTCTGGCTATCACTTTTGTATCTGATGAGAATGATGCCAAAATCCTCAATGACGTTCAGGACAGGTTTGAGGTGAACGTGGCCGAACTTCCTGAAGAAATCGACATCTCCACATATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>|||||| ||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||| | | ||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>24</Hit_num>
+ <Hit_id>gi|77736448|ref|NM_001034752.1|</Hit_id>
+ <Hit_def>Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>NM_001034752</Hit_accession>
+ <Hit_len>1516</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1779.41</Hsp_bit-score>
+ <Hsp_score>1972</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>19</Hsp_query-from>
+ <Hsp_query-to>1404</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1386</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1226</Hsp_identity>
+ <Hsp_positive>1226</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1386</Hsp_align-len>
+ <Hsp_qseq>GAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACC</Hsp_qseq>
+ <Hsp_hseq>GAGACAGGAAGCGCAACAGCGCGTGTCGGGGCTCGAGAACGGTAACCGGAGTCGGGTGGCTCTCTTCGCAGCACGGGGAAGCGAACGAGGAATCAGCAGCATGGCGGAACAGGATGTGGAAAACGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCACCTCCAGAGAGCGCTCCACCTCCCCCCAAGAAAGACGTTAAGGGTTCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGTTGAAGCCGGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTTGAGCATCCATCAGAGGTCCAGCACGAGTGTATTCCACAAGCCATCCTGGGCATGGACATCTTGTGCCAGGCCAAGTCAGGGATGGGCAAGACAGCAGTTTTTGTGTTGGCCACTCTGCAGCAGATCGAGCCCGTCAACGGACAGGTGACAGTCCTAGTGATGTGCCACACTCGAGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAATACATGCCCAGCGTCAAGGTGTCTGTGTTCTTTGGGGGCCTGTCCATCAAGAAAGATGAGGAGGTGTTGAAGAGAAACTGTCCCCACGTGGTGGTGGGGACACCGGGCCGGATCCTGGCACTTGTGCGCAATAGGAGCCTCAACCTGAGGAATGTGAAGCACTTCGTGTTGGATGAGTGCGACAAGATGCTGGAGCAGCTGGATATGCGGCGGGACGTGCAGGAAATCTTCCGCCTGACCCCCCACGAGAAGCAGTGCATGATGTTCAGCGCCACCTTGAGCAAGGAGATCCGACCTGTGTGCAGGAAGTTCATGCAAGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGGCTACAGCAGTACTATGTGAAACTCAAGGACAGTGAGAAGAACCGCAAGCTCTTCGACCTCCTGGATGTGTTGGAGTTTAACCAGGTTGTGATCTTTGTGAAGTCAGTGCAGCGCTGCATGGCCTTGGCCCAGCTCCTGGTAGAACAGAACTTCCCAGCTATTGCCATCCACAGGGGCATGGCCCAGGAAGAGCGCCTGTCGCGCTATCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTTGTCGCCACCAATCTGTTCGGCCGAGGCATGGACATTGAGCGCGTCAACATCGTCTTCAATTATGACATGCCTGAGGACTCGGACACTTACCTCCACCGTGTGGCCCGTGCGGGTCGCTTCGGTACCAAAGGCCTGGCCGTTACTTTCGTGTCTGACGAGAACGATGCCAAAATCCTCAATGATGTCCAGGACCGGTTTGAAGTGAATGTGGCAGAGCTTCCAGAAGAAATTGACATCTCCACATACATTGAGCAGAGCCGGTAACC</Hsp_hseq>
+ <Hsp_midline>||| ||||||||||| || | |||||| | || | | | ||||| ||| || | |||||| ||||| || ||| ||||| ||| ||||| |||||| |||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||| |||| ||||||| | ||| ||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||||||||||||||| || |||||||||||||||| ||||||||||||||||| || || ||| ||||||| || |||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| || || || ||||||||||| ||||| || |||||||||| ||||||||||| || ||||||||||| |||||||| |||||||| || ||||| ||||||||| ||| ||| | ||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||| |||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||| | ||||| || |||||||||||||||||||||||| ||||||||||||| || || ||||||||||| || || ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||| || |||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||||||||| ||| | ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>25</Hit_num>
+ <Hit_id>gi|507964305|ref|XM_004688236.1|</Hit_id>
+ <Hit_def>PREDICTED: Condylura cristata DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004688236</Hit_accession>
+ <Hit_len>1317</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1764.98</Hsp_bit-score>
+ <Hsp_score>1956</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>88</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>4</Hsp_hit-from>
+ <Hsp_hit-to>1317</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1181</Hsp_identity>
+ <Hsp_positive>1181</Hsp_positive>
+ <Hsp_gaps>1</Hsp_gaps>
+ <Hsp_align-len>1315</Hsp_align-len>
+ <Hsp_qseq>AGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>AGCACGCGGAGGCGAACGGGAA-CCAGCACCATGGCAGAACAGGATGTGGAGAATGAGCTTCTGGACTATGAGGAAGATGAAGAGCCCCAGGCGCCTGCAGAGAGCACTCCAGCTCCCCCTAAGAAAGATGTCAAGGGTTCCTACGTCTCCATCCACAGCTCAGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTTGAGCACCCATCAGAGGTGCAGCACGAGTGCATTCCTCAGGCCATTCTGGGCATGGATGTCTTGTGCCAGGCCAAGTCAGGGATGGGCAAGACGGCAGTCTTTGTGCTGGCCACCCTGCAGCAGATCGAGCCTGTCAACGGACAGGTAACAGTCTTGGTGATGTGCCACACACGGGAGCTAGCCTTTCAGATCAGCAAGGAATATGAGCGCTTCTCCAAGTACATGCCTAGTGTCAAGGTGTCTGTGTTCTTCGGAGGCCTCTCCATCAAGAAGGATGAAGAGGTATTGAAGAAGAACTGTCCCCATGTAGTGGTAGGGACTCCGGGCCGAATCCTGGCACTTGTGCGTAACCGGAGTCTCAACCTGAAGAATGTGAAGCACTTTGTGCTGGATGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTACAGGAGATCTTCCGCCTTACACCCCATGAGAAGCAGTGCATGATGTTCAGTGCCACCCTCAGCAAAGAGATCCGGCCCGTCTGCAGGAAATTCATGCAAGATCCCATGGAGGTATTTGTGGATGATGAGACCAAGCTCACCCTACATGGGCTGCAGCAGTACTATGTCAAGCTCAAAGACAGTGAGAAGAACCGCAAACTCTTCGACCTACTGGACGTGCTGGAGTTTAACCAGGTGGTGATCTTTGTGAAGTCGGTTCAGCGCTGCATGGCCCTAGCCCAGCTCCTTGTGGAGCAGAACTTCCCAGCCATTGCCATCCACAGGGGCATGGCCCAGGAGGAGCGGCTGTCACGCTATCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAACGAGTCAACATCGTTTTCAACTATGACATGCCTGAGGATTCAGACACCTACCTCCATCGGGTGGCTCGTGCAGGCCGCTTTGGCACCAAAGGCTTGGCCATCACTTTTGTGTCTGATGAGAACGATGCCAAAATCCTCAATGATGTTCAGGACCGGTTTGAAGTGAATGTGGCAGAACTTCCTGAGGAAATCGATATTTCCACATACATTGAGCAGAGCCGGTAA</Hsp_hseq>
+ <Hsp_midline>||| ||||||| ||||||| | |||||| ||||||||||||||||||||| || || ||| |||| || || ||||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || || ||||| ||||| ||||||||||| |||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||||||||||||||| || ||| |||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| || ||||| || |||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||| || |||||||| || |||||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| || || || |||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || || |||| ||||||||||||||||||||| | ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| || ||||| |||||||||||||| || ||||||||||| || |||||||| || || || |||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>26</Hit_num>
+ <Hit_id>gi|335282777|ref|XM_003123370.2|</Hit_id>
+ <Hit_def>PREDICTED: Sus scrofa ATP-dependent RNA helicase DDX39A-like, transcript variant 1 (LOC100515361), mRNA</Hit_def>
+ <Hit_accession>XM_003123370</Hit_accession>
+ <Hit_len>1553</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1737.93</Hsp_bit-score>
+ <Hsp_score>1926</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>12</Hsp_hit-from>
+ <Hsp_hit-to>1416</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1231</Hsp_identity>
+ <Hsp_positive>1231</Hsp_positive>
+ <Hsp_gaps>3</Hsp_gaps>
+ <Hsp_align-len>1407</Hsp_align-len>
+ <Hsp_qseq>AGCAGCAGCCCGACGCAAGAGGCAGGAAGCGC-AGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>AGCCGCAGTCGGACGTCGGAGACAGGAAGCGCGAACCGCTGGAGTCGGGCCGCGCGACCCGTAACCAGAGTCGGGAGA--CTCCTCGCAGCACGCGGAGGCGAACGAGAAATCAGTGTCATGGCGGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAAGAAGATGAAGAGCCCCAGGCTCCTCCAGAGAATGCTCCAGCTCCCCCCAAGAAAGATGTCAAGGGTTCCTATGTTTCTATCCACAGCTCTGGCTTCCGGGACTTTCTACTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTCGAGCATCCATCTGAGGTCCAGCACGAATGTATTCCACAAGCCATCCTGGGCATGGACGTCCTATGCCAGGCCAAGTCAGGCATGGGCAAGACTGCAGTTTTTGTACTGGCCACCCTGCAGCAGATTGAGCCCGTCAATGGACAGGTGACAGTCCTAGTAATGTGCCACACTCGGGAGCTGGCCTTCCAGATTAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCTAGTGTCAAGGTGTCTGTGTTCTTTGGGGGCCTTTCTATCAAGAAGGATGAAGAAGTTTTGAAGAAGAATTGTCCCCATGTCGTGGTGGGGACGCCGGGTCGGATCCTGGCACTTGTGCGGAACAGGAGCCTAAACCTGAAGAATGTCAAACACTTCGTGTTGGATGAGTGTGACAAGATGCTGGAGCAGTTGGACATGAGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCGCACGAGAAGCAGTGCATGATGTTCAGTGCTACCCTGAGCAAGGAGATCCGGCCCGTCTGCAGGAAGTTCATGCAAGATCCCATGGAAGTGTTTGTGGACGACGAAACCAAGCTCACGCTACATGGACTGCAGCAATACTATGTCAAACTGAAGGACAGTGAGAAGAACCGCAAGCTTTTCGACCTCCTGGATGTGTTGGAGTTTAACCAGGTGGTGATATTTGTGAAGTCTGTGCAGCGCTGCATGGCTCTGGCCCAGCTCCTTGTGGAACAGAACTTCCCAGCCATTGCTATCCACAGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTGGTAGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGCGTCAACATTGTCTTCAATTATGACATGCCCGAGGACTCAGACACCTACCTCCACCGGGTAGCCCGTGCGGGTCGCTTTGGTACCAAAGGCCTGGCCATTACTTTCGTGTCTGATGAGAATGATGCCAAAATCCTCAATGACGTCCAGGATCGGTTTGAAGTGAATGTGGCAGAGCTTCCAGAAGAAATTGACATCTCCACGTACATTGAACAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||| |||| | |||| ||| |||||||||| | | || | ||| | ||| || | |||| ||| || || ||| | ||||| ||||||| ||||| | | ||| ||||||| ||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| ||||| | ||||||||||| |||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||| || || ||||| || ||||||||||||||||||||||| |||||||||||||| || ||||||||||| || || || || ||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||| || || || || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||||| || |||||||| |||||| | | ||| |||||||| || ||||| ||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||||| || || ||| |||||||| ||||||||||||||||| | || || || ||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| || || |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || ||||||||||||||||</Hsp_midline>
+ </Hsp>
+ <Hsp>
+ <Hsp_num>2</Hsp_num>
+ <Hsp_bit-score>44.5672</Hsp_bit-score>
+ <Hsp_score>48</Hsp_score>
+ <Hsp_evalue>0.43337</Hsp_evalue>
+ <Hsp_query-from>1471</Hsp_query-from>
+ <Hsp_query-to>1525</Hsp_query-to>
+ <Hsp_hit-from>1499</Hsp_hit-from>
+ <Hsp_hit-to>1553</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>45</Hsp_identity>
+ <Hsp_positive>45</Hsp_positive>
+ <Hsp_gaps>2</Hsp_gaps>
+ <Hsp_align-len>56</Hsp_align-len>
+ <Hsp_qseq>ACTGTTGAGAAGCTAGAGATT-GTATGAGAATAAACTTGTTATTATGGAAGCCTGG</Hsp_qseq>
+ <Hsp_hseq>ACTGTTTAAAAACTGTAGATTTGTGTAAGAATAAATTT-TTATTATGGAAGCCAGG</Hsp_hseq>
+ <Hsp_midline>|||||| | || || ||||| || | |||||||| || |||||||||||||| ||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>27</Hit_num>
+ <Hit_id>gi|514445080|ref|XM_004999847.1|</Hit_id>
+ <Hit_def>PREDICTED: Cavia porcellus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), transcript variant X2, mRNA</Hit_def>
+ <Hit_accession>XM_004999847</Hit_accession>
+ <Hit_len>1651</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1728.91</Hsp_bit-score>
+ <Hsp_score>1916</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>12</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>137</Hsp_hit-from>
+ <Hsp_hit-to>1532</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1224</Hsp_identity>
+ <Hsp_positive>1224</Hsp_positive>
+ <Hsp_gaps>3</Hsp_gaps>
+ <Hsp_align-len>1397</Hsp_align-len>
+ <Hsp_qseq>GACGCAAGAGGCAGGAAGCGCAGCAACTC-GTGT-CTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>GACGTAGGAGACAGGAAACGCGGCTTCTAAGAGTGCTG-GCGCGCGACGGATAACCGGCGTTGGACGGTACTTCTCGTAGCACGCGGGGGTGAACGAGAAACCAACACCATGGCAGAGCAGGACGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAGGAGCCCCAGGCGCCTGCCGAGAGCACCCCTGTGCTTCCCAAGAAGGACGTGAAGGGCTCCTATGTCTCCATCCACAGCTCGGGCTTCCGGGACTTCCTGCTGAAGCCAGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTCGAGCACCCCTCGGAGGTGCAGCATGAGTGCATCCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACGGCGGTCTTCGTGCTGGCCACCCTGCAGCAGATTGAGCCAGTCAACGGCCAGGTGTCTGTCCTGGTCATGTGTCACACACGGGAGCTGGCCTTCCAGATCAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCCGTGTTCTTTGGAGGCCTGTCCATCAAGAAGGATGAGGAGGTGCTGAAAAGGAACTGTCCCCATGTAGTGGTGGGAACCCCGGGTCGCATCCTGGCCCTTGTGCGGAACAGGAGCCTCAACCTGAAGAACGTGAAGCACTTCGTGCTGGATGAGTGTGACAAGATGCTGGAGCAACTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACGCCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGGGCAAGGAGGTCCGGCCGGTCTGCAGGAAGTTCATGCAGGACCCCATGGAGGTGTTCGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTGAAGCTCAAAGACAGCGAGAAGAACCGCAAGCTCTTCGACCTGCTGGACGTGCTAGAGTTCAATCAGGTGGTGATCTTCGTGAAGTCGGTGCAGCGCTGCATGGCACTGGCCCAGCTCCTGGTGGAGCAGAACTTCCCAGCCATCGCCATCCACCGTGGCATGGCGCAGGAGGAGCGTCTGTCGCGCTACCAGCAGTTCAAGGACTTCCAGCGGCGCATCCTGGTGGCCACCAACCTGTTTGGACGCGGGATGGACATCGAGCGCGTCAACATAGTCTTCAACTACGACATGCCGGAGGACTCGGACACTTACCTGCATCGGGTGGCCCGAGCAGGCCGCTTTGGCACCAAAGGCCTGGCCATCACGTTCGTGTCCGATGAGAATGACGCCAAGATCCTTAACGATGTCCAGGACCGCTTTGAGGTGAACGTGGCCGAGCTCCCGGAAGAGATCGACATCTCCACATATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>|||| | ||| |||||| ||| || || | || ||| |||| || |||| ||||| |||||| | || | | ||| ||||| | ||||| | | ||| || ||||||||| ||||| |||||||| || ||| ||||||| || ||||| || ||||||||||| ||| |||||||| || | | || ||||| ||| | ||||| ||||| || |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||||||||||||||| || ||| |||| | ||||||||||||||| |||||||| |||||||| ||||||||||| || |||||||| |||||| ||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || || |||| ||||| ||||| || |||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || || |||||||||||||||||||| |||||||| || ||||| || |||||||| ||||| ||||| || || ||||||||||| ||||| || || ||||| || || || || || ||||||||||||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>28</Hit_num>
+ <Hit_id>gi|513022593|ref|XM_004872489.1|</Hit_id>
+ <Hit_def>PREDICTED: Heterocephalus glaber DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), transcript variant X6, mRNA</Hit_def>
+ <Hit_accession>XM_004872489</Hit_accession>
+ <Hit_len>2047</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1721.7</Hsp_bit-score>
+ <Hsp_score>1908</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>19</Hsp_query-from>
+ <Hsp_query-to>1385</Hsp_query-to>
+ <Hsp_hit-from>449</Hsp_hit-from>
+ <Hsp_hit-to>1815</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1202</Hsp_identity>
+ <Hsp_positive>1202</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1367</Hsp_align-len>
+ <Hsp_qseq>GAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACA</Hsp_qseq>
+ <Hsp_hseq>GAGGCAGGAAACGCGGCCTTTAGAGTGCCGGCGCGCGACGGATAACCGGCGTTGGGCGCCACTTCTGGTAGCACGCGGAGGCGAACGAGAAACCAGCACCATGGCAGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCCGAGAGCACCCCCACGCTCCCCAAGAAAGACGTGAAGGGCTCCTACGTGTCTATTCACAGCTCTGGCTTCCGAGATTTCCTGCTGAAGCCGGAGCTCCTGAGGGCCATTGTGGACTGTGGCTTTGAGCACCCCTCAGAGGTTCAGCATGAGTGCATCCCCCAGGCCATCCTGGGGATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCAGTCTTCGTTCTGGCCACCCTGCAGCAGATTGAGCCTGTCAATGGCCAGGTGTCAGTCCTGGTTATGTGTCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAGTACATGCCCAACGTCAAGGTGTCTGTGTTCTTTGGGGGCCTCTCCATCAAGAAGGATGAAGACGTTCTGAAGAGAAACTGTCCTCACGTCGTGGTGGGGACCCCAGGTCGGATTCTGGCGCTTGTGCGGAACAGGAGCCTCAACCTGAAGAATGTGAAGCACTTTGTGCTTGACGAGTGTGACAAGATGTTGGAGCAGCTGGACATGAGGCGGGACGTGCAGGAGATCTTCCGCCTGACACCCCACGAGAAGCAGTGCATGATGTTCAGTGCTACCCTGAGCAAGGAGATTCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTAGACGATGAGACCAAGCTCACGCTGCATGGCCTGCAGCAGTACTATGTGAAGCTCAAGGACAGCGAGAAGAACCGAAAGCTCTTCGATCTCCTGGATGTGTTGGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCGGTGCAGCGCTGCATGGCCCTGGCCCAGCTTCTGGTGGAGCAGAACTTCCCAGCCATCGCCATTCACCGAGGCATGGCACAGGAGGAGCGCCTGTCACGTTATCAGCAATTCAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTATTTGGCCGAGGGATGGACATTGAGCGTGTCAACATCGTCTTCAACTATGACATGCCCGAAGACTCAGACACATACTTGCATCGGGTTGCCCGTGCAGGTCGCTTTGGTACCAAAGGCCTGGCCGTCACTTTCGTATCTGATGAGAATGATGCCAAAATTCTTAATGATGTCCAAGACCGATTTGAAGTGAATGTGGCTGAGCTTCCAGAAGAGATCGACATCTCCACATACA</Hsp_hseq>
+ <Hsp_midline>|||||||||| ||| || | | || |||| || |||| ||||| ||||| | || | | ||| ||||||| ||||| | | |||||| |||||||||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| |||||||| || | | ||| ||||||||| | ||||| |||||||| || || ||||||||||||||||| || || ||||||||||||||||||||| ||||||| |||||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || |||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||||||| || |||||| |||||||| || ||||||||||||||||| || || || |||||||| |||||||| |||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||||||||||| |||||||| |||||| |||||||| ||||||| ||||||||| | ||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||| || ||||| ||||| ||| |||| ||||| ||||| || ||||||||||| ||||||||||| ||| ||||||| || ||||| ||||||||||||||||| || ||||| ||||| ||||| |||||||| |||||||| || |||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ <Hsp>
+ <Hsp_num>2</Hsp_num>
+ <Hsp_bit-score>46.3705</Hsp_bit-score>
+ <Hsp_score>50</Hsp_score>
+ <Hsp_evalue>0.124163</Hsp_evalue>
+ <Hsp_query-from>1471</Hsp_query-from>
+ <Hsp_query-to>1519</Hsp_query-to>
+ <Hsp_hit-from>1998</Hsp_hit-from>
+ <Hsp_hit-to>2047</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>41</Hsp_identity>
+ <Hsp_positive>41</Hsp_positive>
+ <Hsp_gaps>1</Hsp_gaps>
+ <Hsp_align-len>50</Hsp_align-len>
+ <Hsp_qseq>ACTGTTGAGAAGCTAGAGATT-GTATGAGAATAAACTTGTTATTATGGAA</Hsp_qseq>
+ <Hsp_hseq>ACTGTTGAAAAGCTGTAGATTTGTGTAAGAATACATTTTTTATTATGGAA</Hsp_hseq>
+ <Hsp_midline>|||||||| ||||| ||||| || | |||||| | || |||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>29</Hit_num>
+ <Hit_id>gi|395837043|ref|XM_003791407.1|</Hit_id>
+ <Hit_def>PREDICTED: Otolemur garnettii ATP-dependent RNA helicase DDX39A-like (LOC100956179), mRNA</Hit_def>
+ <Hit_accession>XM_003791407</Hit_accession>
+ <Hit_len>1335</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1714.49</Hsp_bit-score>
+ <Hsp_score>1900</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>98</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>31</Hsp_hit-from>
+ <Hsp_hit-to>1335</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1163</Hsp_identity>
+ <Hsp_positive>1163</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1305</Hsp_align-len>
+ <Hsp_qseq>GAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>GACGAGCAGGGAACCAGCATCATGGCAGAGCAGCACGTAAAAAACGAACTTTCGGATTATGAGGAAGATGAAGAACTCCAGGCTCCTCCGGAGAGCACTCCAGCTCCCCCTAAGAAAGACGTCAAAGGATCTTATGTTTGCATCCATAGCTCTGGATTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGAGCCATTGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTCCAGCACGAGTGCATTCCACAGGCCATCCTGGGCCTGGACGTCCTGTGCCAGGCCAGGTCTGGGATGGGCAAGACAGCAGTTTTTGTGCTGGCCACCCTGCAACAGATCGAGCCCATCAACGGACAGGTGACAGTCTTGGTCATGTGTCATACCAGAGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGGGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTCTTCTTTGGTGGCCTCTCCATCAGGAAAGATGAAAAAGTATTGAAGAAAAACTGTCCCCATGTTGTGGTGGGGACCCCGGGCCGGATCCTGGCCCTCGTGCGGAACAGGAGCCTCAACCTGAAGAACGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCGGCCGGACATGCGGCGGCATGTGTGGGAGATCTTCCGCCTGACGCCCCGCGAGAAGCAGTGCATGATGTTCAGCGCTACCCTGAGCCAGGAGATCCGCCCTGTCTGCAGGAAGTTCATGCAGGATCCGATGGAGGTGTTTGCGGATGACGAGATCAAGCTCACGCTGCGTGGACTACAGCAGTTCTACGTCAAGCTCCGGGGCAGTGAGAAGAACCGCAAACTCTCTGATCTCTTGGAAGTGCTGGAGTTTGACCAGGTGGTCATCTTTGTCACGTCCATGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGGACAGAACTTCCCAGCCGTTGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCGGTCACGCTATCAGCAGTTCAAGGGTTTCCAGCAGCGGATCCTGGTGGCCACCGATCTGTTTGGCCGAGGGATGGATATTGAGCCAGTCGACATTGTCTTCAACTATGACATGCCGGAGGACTCTGACACCTACCTCCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTGGCCTTCACTTTTGTGTCTGACGAGAATGATGCCAAAATACTCAAGGATGTTCAGGATCGGTTTGGGGTGAATGTGGCAGAATTTCCAGAGGAAATTGCTATCTCCACATACATTAAGCAGAGCTGGTAA</Hsp_hseq>
+ <Hsp_midline>|| || | |||| |||||||||||||||| ||| | || ||||||| |||| |||||| || ||||| ||||| | ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||| || |||| |||||| |||||||| ||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| || || |||||||||||||| || ||||| ||||| |||||||||||||||| ||| |||||||||| || || || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| |||||| |||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||| || || ||||||| ||||||||| ||| | |||||||||||||||||| |||| |||||||||||| |||||||||||| |||||||| | ||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||| || |||| |||| |||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||||| || |||||||||||| ||||||||||||| | |||||||||||||| |||||||| |||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>30</Hit_num>
+ <Hit_id>gi|335282779|ref|XM_003354105.1|</Hit_id>
+ <Hit_def>PREDICTED: Sus scrofa ATP-dependent RNA helicase DDX39A-like, transcript variant 2 (LOC100515361), mRNA</Hit_def>
+ <Hit_accession>XM_003354105</Hit_accession>
+ <Hit_len>1520</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1714.49</Hsp_bit-score>
+ <Hsp_score>1900</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>117</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>94</Hsp_hit-from>
+ <Hsp_hit-to>1383</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1154</Hsp_identity>
+ <Hsp_positive>1154</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1290</Hsp_align-len>
+ <Hsp_qseq>TCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>TCATGGCGGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAAGAAGATGAAGAGCCCCAGGCTCCTCCAGAGAATGCTCCAGCTCCCCCCAAGAAAGATGTCAAGGGTTCCTATGTTTCTATCCACAGCTCTGGCTTCCGGGACTTTCTACTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTCGAGCATCCATCTGAGGTCCAGCACGAATGTATTCCACAAGCCATCCTGGGCATGGACGTCCTATGCCAGGCCAAGTCAGGCATGGGCAAGACTGCAGTTTTTGTACTGGCCACCCTGCAGCAGATTGAGCCCGTCAATGGACAGGTGACAGTCCTAGTAATGTGCCACACTCGGGAGCTGGCCTTCCAGATTAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCTAGTGTCAAGGTGTCTGTGTTCTTTGGGGGCCTTTCTATCAAGAAGGATGAAGAAGTTTTGAAGAAGAATTGTCCCCATGTCGTGGTGGGGACGCCGGGTCGGATCCTGGCACTTGTGCGGAACAGGAGCCTAAACCTGAAGAATGTCAAACACTTCGTGTTGGATGAGTGTGACAAGATGCTGGAGCAGTTGGACATGAGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCGCACGAGAAGCAGTGCATGATGTTCAGTGCTACCCTGAGCAAGGAGATCCGGCCCGTCTGCAGGAAGTTCATGCAAGATCCCATGGAAGTGTTTGTGGACGACGAAACCAAGCTCACGCTACATGGACTGCAGCAATACTATGTCAAACTGAAGGACAGTGAGAAGAACCGCAAGCTTTTCGACCTCCTGGATGTGTTGGAGTTTAACCAGGTGGTGATATTTGTGAAGTCTGTGCAGCGCTGCATGGCTCTGGCCCAGCTCCTTGTGGAACAGAACTTCCCAGCCATTGCTATCCACAGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTGGTAGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGCGTCAACATTGTCTTCAATTATGACATGCCCGAGGACTCAGACACCTACCTCCACCGGGTAGCCCGTGCGGGTCGCTTTGGTACCAAAGGCCTGGCCATTACTTTCGTGTCTGATGAGAATGATGCCAAAATCCTCAATGACGTCCAGGATCGGTTTGAAGTGAATGTGGCAGAGCTTCCAGAAGAAATTGACATCTCCACGTACATTGAACAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||||||| ||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| ||||| | ||||||||||| |||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||| || || ||||| || ||||||||||||||||||||||| |||||||||||||| || ||||||||||| || || || || ||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||| || || || || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || |||||||| || |||||||| |||||| | | ||| |||||||| || ||||| ||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||||||| || || ||| |||||||| ||||||||||||||||| | || || || ||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| || || |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || ||||||||||||||||</Hsp_midline>
+ </Hsp>
+ <Hsp>
+ <Hsp_num>2</Hsp_num>
+ <Hsp_bit-score>44.5672</Hsp_bit-score>
+ <Hsp_score>48</Hsp_score>
+ <Hsp_evalue>0.43337</Hsp_evalue>
+ <Hsp_query-from>1471</Hsp_query-from>
+ <Hsp_query-to>1525</Hsp_query-to>
+ <Hsp_hit-from>1466</Hsp_hit-from>
+ <Hsp_hit-to>1520</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>45</Hsp_identity>
+ <Hsp_positive>45</Hsp_positive>
+ <Hsp_gaps>2</Hsp_gaps>
+ <Hsp_align-len>56</Hsp_align-len>
+ <Hsp_qseq>ACTGTTGAGAAGCTAGAGATT-GTATGAGAATAAACTTGTTATTATGGAAGCCTGG</Hsp_qseq>
+ <Hsp_hseq>ACTGTTTAAAAACTGTAGATTTGTGTAAGAATAAATTT-TTATTATGGAAGCCAGG</Hsp_hseq>
+ <Hsp_midline>|||||| | || || ||||| || | |||||||| || |||||||||||||| ||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>31</Hit_num>
+ <Hit_id>gi|314122335|ref|NM_197982.3|</Hit_id>
+ <Hit_def>Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 (Ddx39), mRNA</Hit_def>
+ <Hit_accession>NM_197982</Hit_accession>
+ <Hit_len>1659</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1710.88</Hsp_bit-score>
+ <Hsp_score>1896</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>20</Hsp_query-from>
+ <Hsp_query-to>1404</Hsp_query-to>
+ <Hsp_hit-from>69</Hsp_hit-from>
+ <Hsp_hit-to>1451</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1211</Hsp_identity>
+ <Hsp_positive>1211</Hsp_positive>
+ <Hsp_gaps>2</Hsp_gaps>
+ <Hsp_align-len>1385</Hsp_align-len>
+ <Hsp_qseq>AGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACC</Hsp_qseq>
+ <Hsp_hseq>AGGCAGGAAGCACTGTAGCGCGCGTCCAGGGTCGCGGCGTAGAACCGGAC--GGGTGGCTCTCTTTGCAGCTCGCGGAGGCGAACCGGGCGGCAGTGCCATGGCAGAACAGGATGTGGAAAATGAACTTTTGGATTATGATGAAGATGAAGAGCCCCAGGCACCCCAGGAGAGCACTCCAGCTCCCCCGAAGAAAGATGTCAAAGGATCTTATGTCTCCATCCACAGTTCTGGCTTCCGGGACTTTCTACTGAAGCCAGAGCTCCTGAGAGCTATAGTTGACTGTGGCTTTGAGCATCCTTCAGAGGTCCAGCATGAGTGTATTCCCCAGGCCATTCTGGGTATGGATGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACAGCTGTGTTTGTGCTGGCCACCCTGCAGCAGATTGAGCCTGTCAATGGCCAGGTATCAGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCTAAGTACATGCCCAGTGTTAAGGTTTCTGTGTTCTTTGGAGGCCTCTCCATTAAGAAGGATGAAGATGTGTTGAAGAAGAACTGTCCTCATGTTGTGGTGGGGACACCAGGCCGGATCCTGGCACTTGTGCGGAGCAGGAGCCTCAACCTGAGGAATGTGAAGCACTTTGTGCTAGATGAATGTGACAAGATGCTGGAACAGCTGGACATGCGCCGGGATGTACAGGAGATCTTTCGTCTGACACCCCACGAGAAGCAGTGTATGATGTTCAGCGCCACCCTGAGCAAGGAGATCCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCTATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACACTGCATGGGCTGCAGCAGTATTACGTCAAGCTCAAGGACAGTGAGAAGAACCGTAAGCTCTTCGACCTCCTCGACGTGCTAGAGTTTAACCAGGTGGTGATCTTTGTCAAGTCTGTGCAACGCTGCATGGCCCTGGCCCAGCTCCTAGTGGAGCAGAATTTCCCAGCTATCGCTATTCACCGAGGCATGGCCCAGGAGGAGCGCCTGTCCCGATACCAGCAGTTCAAGGACTTCCAGCGACGAATCCTGGTGGCTACTAATCTGTTTGGCAGAGGTATGGACATTGAGCGAGTCAACATTGTCTTCAACTATGACATGCCAGAGGACTCAGACACCTACCTTCACCGAGTGGCTCGTGCTGGTCGCTTTGGTACCAAGGGCCTGGCAGTCACTTTTGTATCGGATGAAAATGATGCCAAAATCCTTAATGATGTTCAGGACCGGTTTGAAGTGAATGTAGCTGAGCTTCCAGAGGAAATAGATATCTCCACATACATTGAGCAGAGCCGGTAACC</Hsp_hseq>
+ <Hsp_midline>||||||||||| | | | | || ||| | | ||||| | ||||| | || | |||||| ||||| ||||||| |||| ||| | ||| |||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| || || |||||||| ||||||||||| |||||||| |||| ||||| || || ||||||||||| |||||||||||||||||||| |||||||| ||||||||| | || || || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| |||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| || ||||| ||||||||||| || || |||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| || ||||||| |||||| ||| ||| | ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| || ||| | || ||||| ||||||||||||||| | ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||||| || ||||||||||| || |||||||||||| | || |||||||| |||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||| ||||| || |||||||||| || || || ||||||||||||||||| ||||| || ||||||||||||||||| ||||| || || |||||||||||||| || |||||||||||||| |||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>32</Hit_num>
+ <Hit_id>gi|507579041|ref|XM_004672976.1|</Hit_id>
+ <Hit_def>PREDICTED: Jaculus jaculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), mRNA</Hit_def>
+ <Hit_accession>XM_004672976</Hit_accession>
+ <Hit_len>1284</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1705.47</Hsp_bit-score>
+ <Hsp_score>1890</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>119</Hsp_query-from>
+ <Hsp_query-to>1401</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1283</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1148</Hsp_identity>
+ <Hsp_positive>1148</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1283</Hsp_align-len>
+ <Hsp_qseq>ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTA</Hsp_qseq>
+ <Hsp_hseq>ATGGCAGAACAGGACGTGGAGAATGAGCTTTTGGATTATGATGAGTATGAAGAGCCCCAGGCACCCCAGGAGAGTACTCCAGCTCCCCCCAAGAAGGACGTCAAGGGGTCCTATGTGTCCATCCACAGCTCTGGCTTCCGGGACTTCCTGTTGAAGCCGGAGCTCCTGAGGGCCATAGTGGACTGCGGCTTCGAGCACCCCTCAGAGGTCCAGCATGAATGCATTCCCCAGGCCATCCTGGGCATGGATATCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACAGCCGTGTTCGTACTAGCTACCCTGCAGCAGATGGAGCCTGTCAATGGCCAGGTGTCAGTCCTCGTCATGTGCCACACCCGGGAGCTGGCCTTCCAAATCAGCAAAGAGTACGAGCGCTTCTCCAAGTACATGCCCAGTGTCAAGGTGTCTGTGTTCTTCGGGGGTCTCTCCATCAAGAAGGATGAGGAAGTGTTGAAAAAGAACTGTCCCCACATCGTGGTGGGCACGCCAGGCCGGGTCCTGGCGCTCGTGAGGAACAGGAGTCTCAACCTGAGGAACGTGAAGCACTTCGTGCTGGACGAGTGCGACAAGATGCTGGAACAGCTGGATATGCGGCGGGACGTGCAGGAGATCTTCCGGGTGACGCCCCACGAGAAGCAGTGTATGATGTTCAGTGCCACCCTGAGCAAGGAGATGCGGCCAGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTCGTGGACGACGAGACCAAGCTCACGCTGCACGGGCTGCAGCAGCACTACGTCAAGCTGAAGGACACAGAGAAGAACCGCAAGCTCTTTGACCTCCTGGACGTGCTGGAGTTCAACCAGGTGGTGATCTTCGTCAAGTCGGTGCAGCGCTGCATGGCTCTGGCCCAGCTCCTGGTGGAGCAGAACTTCCCAGCCATCGCCATACACCGGGGCATGGCCCAGGAAGAGCGCCTCTCGCGCTACCAGCAGTTTAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATCGAGCGTGTCAACATCGTCTTCAACTATGACATGCCTGAGGACTCCGATACCTACCTCCATCGAGTGGCTCGCGCTGGTCGTTTTGGGACCAAGGGCCTGGCTATTACTTTTGTGTCTGATGAGAATGATGCCAAAATCCTCAATGATGTTCAGGACCGGTTTGAAGTGAATGTGGCAGAGCTTCCGGAAGAAATCGACATCTCCACATACATTGAGCAGAGCCGGTA</Hsp_hseq>
+ <Hsp_midline>|||||||||||||| ||||| || || ||||||||||| ||||| | |||||||||||||| || || ||||| || ||||||||||| ||||| ||| ||||||| ||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||| ||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || ||||| || || ||||| |||||||| ||||||||||| || |||||| | ||||| |||||||||||||| |||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| || || ||||| |||||||||||||| |||| ||||| ||| ||| | ||| ||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| || || |||| ||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| || || ||||| || || ||||| ||||| ||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>33</Hit_num>
+ <Hit_id>gi|514445078|ref|XM_003461817.2|</Hit_id>
+ <Hit_def>PREDICTED: Cavia porcellus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), transcript variant X1, mRNA</Hit_def>
+ <Hit_accession>XM_003461817</Hit_accession>
+ <Hit_len>1489</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1703.67</Hsp_bit-score>
+ <Hsp_score>1888</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>113</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>77</Hsp_hit-from>
+ <Hsp_hit-to>1370</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1154</Hsp_identity>
+ <Hsp_positive>1154</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1294</Hsp_align-len>
+ <Hsp_qseq>AGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>AGCACCATGGCAGAGCAGGACGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAGGAGCCCCAGGCGCCTGCCGAGAGCACCCCTGTGCTTCCCAAGAAGGACGTGAAGGGCTCCTATGTCTCCATCCACAGCTCGGGCTTCCGGGACTTCCTGCTGAAGCCAGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTCGAGCACCCCTCGGAGGTGCAGCATGAGTGCATCCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACGGCGGTCTTCGTGCTGGCCACCCTGCAGCAGATTGAGCCAGTCAACGGCCAGGTGTCTGTCCTGGTCATGTGTCACACACGGGAGCTGGCCTTCCAGATCAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCCGTGTTCTTTGGAGGCCTGTCCATCAAGAAGGATGAGGAGGTGCTGAAAAGGAACTGTCCCCATGTAGTGGTGGGAACCCCGGGTCGCATCCTGGCCCTTGTGCGGAACAGGAGCCTCAACCTGAAGAACGTGAAGCACTTCGTGCTGGATGAGTGTGACAAGATGCTGGAGCAACTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACGCCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGGGCAAGGAGGTCCGGCCGGTCTGCAGGAAGTTCATGCAGGACCCCATGGAGGTGTTCGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTGAAGCTCAAAGACAGCGAGAAGAACCGCAAGCTCTTCGACCTGCTGGACGTGCTAGAGTTCAATCAGGTGGTGATCTTCGTGAAGTCGGTGCAGCGCTGCATGGCACTGGCCCAGCTCCTGGTGGAGCAGAACTTCCCAGCCATCGCCATCCACCGTGGCATGGCGCAGGAGGAGCGTCTGTCGCGCTACCAGCAGTTCAAGGACTTCCAGCGGCGCATCCTGGTGGCCACCAACCTGTTTGGACGCGGGATGGACATCGAGCGCGTCAACATAGTCTTCAACTACGACATGCCGGAGGACTCGGACACTTACCTGCATCGGGTGGCCCGAGCAGGCCGCTTTGGCACCAAAGGCCTGGCCATCACGTTCGTGTCCGATGAGAATGACGCCAAGATCCTTAACGATGTCCAGGACCGCTTTGAGGTGAACGTGGCCGAGCTCCCGGAAGAGATCGACATCTCCACATATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>|||| ||||||||| ||||| |||||||| || ||| ||||||| || ||||| || ||||||||||| ||| |||||||| || | | || ||||| ||| | ||||| ||||| || |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||||||||||||||| || ||| |||| | ||||||||||||||| |||||||| |||||||| ||||||||||| || |||||||| |||||| ||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || || |||| ||||| ||||| || |||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || || |||||||||||||||||||| |||||||| || ||||| || |||||||| ||||| ||||| || || ||||||||||| ||||| || || ||||| || || || || || ||||||||||||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>34</Hit_num>
+ <Hit_id>gi|514445082|ref|XM_004999848.1|</Hit_id>
+ <Hit_def>PREDICTED: Cavia porcellus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), transcript variant X3, mRNA</Hit_def>
+ <Hit_accession>XM_004999848</Hit_accession>
+ <Hit_len>1521</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1701.86</Hsp_bit-score>
+ <Hsp_score>1886</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>114</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>110</Hsp_hit-from>
+ <Hsp_hit-to>1402</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1153</Hsp_identity>
+ <Hsp_positive>1153</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1293</Hsp_align-len>
+ <Hsp_qseq>GCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>GCACCATGGCAGAGCAGGACGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAGGAGCCCCAGGCGCCTGCCGAGAGCACCCCTGTGCTTCCCAAGAAGGACGTGAAGGGCTCCTATGTCTCCATCCACAGCTCGGGCTTCCGGGACTTCCTGCTGAAGCCAGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTCGAGCACCCCTCGGAGGTGCAGCATGAGTGCATCCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACGGCGGTCTTCGTGCTGGCCACCCTGCAGCAGATTGAGCCAGTCAACGGCCAGGTGTCTGTCCTGGTCATGTGTCACACACGGGAGCTGGCCTTCCAGATCAGCAAGGAGTACGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCCGTGTTCTTTGGAGGCCTGTCCATCAAGAAGGATGAGGAGGTGCTGAAAAGGAACTGTCCCCATGTAGTGGTGGGAACCCCGGGTCGCATCCTGGCCCTTGTGCGGAACAGGAGCCTCAACCTGAAGAACGTGAAGCACTTCGTGCTGGATGAGTGTGACAAGATGCTGGAGCAACTGGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACGCCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGGGCAAGGAGGTCCGGCCGGTCTGCAGGAAGTTCATGCAGGACCCCATGGAGGTGTTCGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTGAAGCTCAAAGACAGCGAGAAGAACCGCAAGCTCTTCGACCTGCTGGACGTGCTAGAGTTCAATCAGGTGGTGATCTTCGTGAAGTCGGTGCAGCGCTGCATGGCACTGGCCCAGCTCCTGGTGGAGCAGAACTTCCCAGCCATCGCCATCCACCGTGGCATGGCGCAGGAGGAGCGTCTGTCGCGCTACCAGCAGTTCAAGGACTTCCAGCGGCGCATCCTGGTGGCCACCAACCTGTTTGGACGCGGGATGGACATCGAGCGCGTCAACATAGTCTTCAACTACGACATGCCGGAGGACTCGGACACTTACCTGCATCGGGTGGCCCGAGCAGGCCGCTTTGGCACCAAAGGCCTGGCCATCACGTTCGTGTCCGATGAGAATGACGCCAAGATCCTTAACGATGTCCAGGACCGCTTTGAGGTGAACGTGGCCGAGCTCCCGGAAGAGATCGACATCTCCACATATATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||| ||||||||| ||||| |||||||| || ||| ||||||| || ||||| || ||||||||||| ||| |||||||| || | | || ||||| ||| | ||||| ||||| || |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||||||||||||||| || ||| |||| | ||||||||||||||| |||||||| |||||||| ||||||||||| || |||||||| |||||| ||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || || |||| ||||| ||||| || |||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||| || || |||||||||||||||||||| |||||||| || ||||| || |||||||| ||||| ||||| || || ||||||||||| ||||| || || ||||| || || || || || ||||||||||||||||| || |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>35</Hit_num>
+ <Hit_id>gi|426387516|ref|XM_004060165.1|</Hit_id>
+ <Hit_def>PREDICTED: Gorilla gorilla gorilla DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A, transcript variant 2 (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004060165</Hit_accession>
+ <Hit_len>1423</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1698.26</Hsp_bit-score>
+ <Hsp_score>1882</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>7</Hsp_query-from>
+ <Hsp_query-to>982</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>976</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>962</Hsp_identity>
+ <Hsp_positive>962</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>976</Hsp_align-len>
+ <Hsp_qseq>AGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAG</Hsp_qseq>
+ <Hsp_hseq>AGCCCGACGCAAGAGGCAGGAAGCGCGGCAGCTCGTGTCTGAGCGCCCGGCGGAATACCGAAGTCAGAAGGCTCTGTTAGCAGCACGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCGGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACAGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGATGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCCTGGATGTGCTGGAGTTTAACCAG</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ <Hsp>
+ <Hsp_num>2</Hsp_num>
+ <Hsp_bit-score>794.769</Hsp_bit-score>
+ <Hsp_score>880</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1092</Hsp_query-from>
+ <Hsp_query-to>1539</Hsp_query-to>
+ <Hsp_hit-from>976</Hsp_hit-from>
+ <Hsp_hit-to>1423</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>445</Hsp_identity>
+ <Hsp_positive>445</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>448</Hsp_align-len>
+ <Hsp_qseq>GCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_qseq>
+ <Hsp_hseq>GCCTGTCACGCTATCAGCAGTTTAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTATCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATTGAGCAGAGCCGGTAACCACCACGTGCCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>36</Hit_num>
+ <Hit_id>gi|512915096|ref|XM_004902910.1|</Hit_id>
+ <Hit_def>PREDICTED: Heterocephalus glaber DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), mRNA</Hit_def>
+ <Hit_accession>XM_004902910</Hit_accession>
+ <Hit_len>1924</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1691.04</Hsp_bit-score>
+ <Hsp_score>1874</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>19</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>401</Hsp_hit-from>
+ <Hsp_hit-to>1788</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1204</Hsp_identity>
+ <Hsp_positive>1204</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1388</Hsp_align-len>
+ <Hsp_qseq>GAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>GAGGCAGGAAACGCGGCCTTTAGAGTGCCGGCGCGCGACGGATAACCGGCGTTGGGCGCCACTTCTGGTAGCACGCGGAGGCGAACGAGAAACCAGCACCATGGCAGAACAGGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTCCCGAGAGCACCCCCACGCTCCCCAAGAAAGACGTGAAGGGCTCCTACGTGTCTATTCACAGCTCTGGCTTCCGAGATNNNNNNNNNNNNNNNNNNNTCCTGAGGGCCATTGTGGACTGTGGCTTTGAGCACCCCTCAGAGGTTCAGCATGAGTGCATCCCCCAGGCCATCCTGGGGATGGACGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACGGCAGTCTTCGTTCTGGCCACCCTGCAGCAGATTGAGCCTGTCAATGGCCAGGTGTCAGTCCTGGTTATGTGTCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCCAAGTACATGCCCAACGTCAAGGTGTCTGTGTTCTTTGGGGGCCTCTCCATCAAGAAGGATGAAGACGTTCTGAAGAGAAACTGTCCTCACGTCGTGGTGGGGACCCCAGGTCGGATTCTGGCGCTTGTGCGGAACAGGAGCCTCAACCTGAAGAATGTGAAGCACTTTGTGCTTGACGAGTGTGACAAGATGTTGGAGCAGCTGGACATGAGGCGGGACGTGCAGGAGATCTTCCGCCTGACACCCCACGAGAAGCAGTGCATGATGTTCAGTGCTACCCTGAGCAAGGAGATTCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTAGACGATGAGACCAAGCTCACGCTGCATGGCCTGCAGCAGTACTATGTGAAGCTCAAGGACAGCGAGAAGAACCGAAAGCTCTTCGATCTCCTGGATGTGTTGGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCGGTGCAGCGCTGCATGGCCCTGGCCCAGCTTCTGGTGGAGCAGAACTTCCCAGCCATCGCCATTCACCGAGGCATGGCACAGGAGGAGCGCCTGTCACGTTATCAGCAATTCAAGGACTTCCAGCGGCGGATCCTGGTGGCCACCAATCTATTTGGCCGAGGGATGGACATTGAGCGTGTCAACATCGTCTTCAACTATGACATGCCCGAAGACTCAGACACATACTTGCATCGGGTTGCCCGTGCAGGTCGCTTTGGTACCAAAGGCCTGGCCGTCACTTTCGTATCTGATGAGAATGATGCCAAAATTCTTAATGATGTCCAAGACCGATTTGAAGTGAATGTGGCTGAGCTTCCAGAAGAGATCGACATCTCCACATACATTGAGCAGAGCCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>|||||||||| ||| || | | || |||| || |||| ||||| ||||| | || | | ||| ||||||| ||||| | | |||||| |||||||||||||||||||||||| || ||| ||||||| || ||||| ||||||||||||||||||| |||||||| || | | ||| ||||||||| | ||||| |||||||| || || ||||||||||||||||| || ||||| ||||||| |||||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || |||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||||||| || |||||| |||||||| || ||||||||||||||||| || || || |||||||| |||||||| |||||| ||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||||||||||| |||||||| |||||| |||||||| ||||||| ||||||||| | ||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||| || ||||| ||||| ||| |||| ||||| ||||| || ||||||||||| ||||||||||| ||| ||||||| || ||||| ||||||||||||||||| || ||||| ||||| ||||| |||||||| |||||||| || |||||||| || |||||||||||||||||||| |||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ <Hsp>
+ <Hsp_num>2</Hsp_num>
+ <Hsp_bit-score>46.3705</Hsp_bit-score>
+ <Hsp_score>50</Hsp_score>
+ <Hsp_evalue>0.124163</Hsp_evalue>
+ <Hsp_query-from>1471</Hsp_query-from>
+ <Hsp_query-to>1519</Hsp_query-to>
+ <Hsp_hit-from>1875</Hsp_hit-from>
+ <Hsp_hit-to>1924</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>41</Hsp_identity>
+ <Hsp_positive>41</Hsp_positive>
+ <Hsp_gaps>1</Hsp_gaps>
+ <Hsp_align-len>50</Hsp_align-len>
+ <Hsp_qseq>ACTGTTGAGAAGCTAGAGATT-GTATGAGAATAAACTTGTTATTATGGAA</Hsp_qseq>
+ <Hsp_hseq>ACTGTTGAAAAGCTGTAGATTTGTGTAAGAATACATTTTTTATTATGGAA</Hsp_hseq>
+ <Hsp_midline>|||||||| ||||| ||||| || | |||||| | || |||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>37</Hit_num>
+ <Hit_id>gi|507632955|ref|XM_004628246.1|</Hit_id>
+ <Hit_def>PREDICTED: Octodon degus ATP-dependent RNA helicase DDX39A-like (LOC101565452), mRNA</Hit_def>
+ <Hit_accession>XM_004628246</Hit_accession>
+ <Hit_len>1422</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1683.83</Hsp_bit-score>
+ <Hsp_score>1866</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>88</Hsp_query-from>
+ <Hsp_query-to>1406</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1320</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1166</Hsp_identity>
+ <Hsp_positive>1166</Hsp_positive>
+ <Hsp_gaps>1</Hsp_gaps>
+ <Hsp_align-len>1320</Hsp_align-len>
+ <Hsp_qseq>AGCGCGCGGAGAAGAACGGGGAGCCA-GCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCAC</Hsp_qseq>
+ <Hsp_hseq>AGCACGCGGAGGTGAACGAGAAACTAAGCACTATGGCAGAACAAGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTGCTGAGAGCACTCCCGCATTACCAAAGAAAGATGTGAAGGGCTCCTATGTCTCCATCCACAGCTCTGGCTTTCGGGACTTCCTGCTGAAGCCAGAGCTCCTGAGGGCCATAGTGGACTGTGGCTTTGAGCATCCCTCAGAGGTTCAGCATGAGTGCATCCCCCAGGCCATCCTGGGCATGGATGTCCTGTGCCAGGCCAAGTCTGGAATGGGCAAGACAGCAGTCTTCGTGCTGGCCACCCTACAGCAAATTGAGCCTGTCAACGGCCAGGTGGCAGTTCTGGTCATGTGTCACACAAGGGAGCTGGCCTTCCAGATCAGCAAGGAATACGAGCGTTTCTCCAAGTACATGCCCAGCATCAAGGTGTCTGTGTTCTTTGGAGGCCTCTCCATCAAGAAGGATGAGGAAGTACTGAAGAGAAACTGTCCTCACGTCGTGGTGGGAACCCCAGGCCGGATCCTGGCACTCGTGAGAAACAGGACCCTCAACCTGAAGAACGTGAAGCACTTTGTGCTTGATGAATGTGACAAGATGCTGGAGCAGCTAGATATGAGGCGGGACGTACAGGAGATCTTCCGCCTGACACCCCATGAGAAGCAGTGCATGATGTTCGGCGCCACTCTGAGCAAGGAGATCCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTAGACGATGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTGAAGCTCAAGGACAGTGAGAAGAACCGCAAGCTGTTTGACCTCCTGGATGTATTAGAATTTAACCAGGTGGTGATCTTCGTGAAGTCCGTGCAGCGTTGCATGGCCCTGGCCCAGCTCCTGGTGGAGCAGAACTTCCCGGCCATCGCCATTCACCGTGGCATGGCACAGGAGGAGCGCCTATCACGATACCAGCAGTTCAAGGACTTCCAGAGGCGGATCCTGGTGGCCACTAATCTGTTTGGACGAGGGATGGACATTGAACGCGTCAACATCGTCTTCAACTACGATATGCCCGAAGACTCAGACACTTACCTGCACCGGGTTGCCCATGCAGGTCGCTTTGGTACCAAAGGCCTGGCCATCACTTTTGTGTCTGATGAGAATGATGCCAAAATTCTTAATGATGTTCAAGACCGGTTTGAAGTTAATGTGGCTGAGTTTCCAGAAGAGATCAATATCTCCACATACATTGAACAGAGTCGGTAACCAC</Hsp_hseq>
+ <Hsp_midline>||| ||||||| ||||| | | | | ||| ||||||||||| ||||||||||| || ||| ||||||| || ||||| |||||||||||||||||| |||||||| || || || |||||||| | ||||| ||||| || |||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| | || ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||| ||||| |||||| |||||||| || ||||||||||| ||||| ||||| |||||||| |||||| | || |||| | ||| ||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||| || ||| ||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||| ||||||| | || |||||||||||| | |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| || |||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || ||||||||||| || || |||||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||| |||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || || ||||||||||||||||||||||| || ||||||| || ||| | |||||||||||||| || ||||| ||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>38</Hit_num>
+ <Hit_id>gi|505846802|ref|XM_004616817.1|</Hit_id>
+ <Hit_def>PREDICTED: Sorex araneus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_004616817</Hit_accession>
+ <Hit_len>1287</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1673.01</Hsp_bit-score>
+ <Hsp_score>1854</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>118</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>3</Hsp_hit-from>
+ <Hsp_hit-to>1287</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1142</Hsp_identity>
+ <Hsp_positive>1142</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1285</Hsp_align-len>
+ <Hsp_qseq>CATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>CATGGCCGAACAGGACGTGGAGAATGAGCTCCTGGACTACGAGGAGGATGAGGAGCCCCAGGCCCCTGCCGAGAGCACCCCGGCCCCCCCCAAGAAGGATGTCAAGGGCTCCTACGTGTCCATCCACAGCTCTGGCTTCCGGGACTTCCTGCTGAAGCCGGAGCTGCTGCGGGCCATCGTGGACTGTGGCTTCGAGCACCCATCCGAGGTCCAGCATGAGTGCATCCCGCAGGCCATCCTGGGCATGGACATCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACGGCTGTGTTCGTGCTCGCCACCCTGCAGCAGATCGAGCCCATCAACGGACAGGTGGCAGTCCTGGTCATGTGCCACACGCGGGAGTTGGCCTTCCAGATCAGCAAGGAGTACGAGCGCTTCTCTAAGTACATGGCCAGCGTGAAGGTGTCCGTGTTCTTCGGGGGCCTCTCCATCAAGAAGGACGAGGAAGTGCTGAAGAGGAACTGCCCCCACGTGGTGGTGGGGACCCCCGGGCGCATCCTGGCGCTGGTCCGGAACCGGAGCCTCAGTCTGAAGAATGTGAAGCACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGCGACGTGCAGGAGATCTTCCGGCTGACCCCGCACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAGGGACATCCGGCCCGTGTGCCGCAAGTTCATGCAAGACCCCATGGAGGTGTTTGTGGATGACGAGACCAAGCTGACGCTGCACGGGCTGCAGCAGTACTACGTGAAGCTCAAGGACAGCGAAAAGAACCGCAAACTCTTCGACCTGCTGGATGTGCTGGAGTTCAACCAGGTGGTCATTTTCGTCAAGTCGGTGCAGCGTTGCATGGCCCTGGCACAGCTCCTGGTGGAGCAGAACTTCCCGGCCATTGCCATCCACCGGGGCATGGCGCAGGAGGAGCGCCTGTCGCGCTACCAGCAGTTCAAGGACTTCCAGCGCCGGATCCTGGTGGCCACCAATCTGTTTGGCCGCGGGATGGACATCGAACGGGTCAACATCGTCTTCAACTATGACATGCCTGAGGATTCGGACACCTACCTCCACCGGGTGGCCCGTGCCGGCCGCTTCGGGACCAAGGGCCTGGCCATCACCTTTGTATCGGACGAGAACGACGCCAAGATCCTCAATGACGTGCAGGACCGGTTTGAAGTGAACGTGGCGGAGCTGCCCGAGGAGATTGACATCTCGACTTACATTGAGCAGAGTCGGTAA</Hsp_hseq>
+ <Hsp_midline>|||||| |||||||| ||||| || || || |||| ||||| || || || ||||||||||| ||| |||||||| || || ||||| ||||| || ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||| || ||||||||| ||||||| |||||||| ||||||||||| || ||||||||||||||||| || |||||| |||||| |||||| ||||| || |||||||||||||| || |||||||||||||| || ||||| ||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | ||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| || ||||||||||| ||||| || || |||||||||||||||| ||||||||| | || ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| || || ||||| || ||||| ||||| |||||||| ||||| || |||||||| || ||||| |||||||||||||| ||||||||||||||||| || ||||| || || || ||||| || |||||||| || ||||| |||||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>39</Hit_num>
+ <Hit_id>gi|524975569|ref|XM_005087556.1|</Hit_id>
+ <Hit_def>PREDICTED: Mesocricetus auratus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), mRNA</Hit_def>
+ <Hit_accession>XM_005087556</Hit_accession>
+ <Hit_len>1648</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1654.98</Hsp_bit-score>
+ <Hsp_score>1834</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>79</Hsp_query-from>
+ <Hsp_query-to>1405</Hsp_query-to>
+ <Hsp_hit-from>113</Hsp_hit-from>
+ <Hsp_hit-to>1439</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1163</Hsp_identity>
+ <Hsp_positive>1163</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1327</Hsp_align-len>
+ <Hsp_qseq>TCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCA</Hsp_qseq>
+ <Hsp_hseq>TCTCCTCGCAGCTCGCGGAGGCGAACCGGGCGACAGTGCCATGGCAGAACAAGATGTGGAAAACGAGCTTTTGGATTATGATGAAGATGAAGAGCCCCAAGCACCCCAGGAGAGCACTCCAGCTCCTCCGAAGAAAGATGTCAAAGGATCTTATGTCTCCATTCACAGTTCTGGTTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGAGCCATAGTTGACTGCGGTTTTGAGCATCCTTCAGAGGTCCAGCATGAGTGTATTCCCCAGGCCATTCTGGGTATGGATGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACAGCTGTGTTTGTGCTGGCCACCCTGCAGCAGATCGAGCCCATCAATGGCCAGGTATCTGTACTGGTCATGTGCCATACAAGAGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCTAAGTACATGCCCAGTGTCAAGGTATCTGTGTTCTTTGGGGGCCTCTCCATTAAGAAGGATGAAGATGTGTTGAAGAAGAACTGTCCCCATGTTGTGGTGGGGACACCAGGCCGGATCCTGGCACTTGTACGGAGCAGGAGTCTGAACCTGAGGAATGTGAAGCACTTTGTGCTAGATGAGTGTGACAAGATGCTGGAACAGCTGGACATGCGTCGGGACGTGCAAGAGATCTTTCGCCTGACGCCCCATGAGAAGCAGTGCATGATGTTCAGTGCCACCCTGAGCAAGGAGATCCGACCGGTCTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACACTACACGGGCTACAGCAGTACTACGTCAAGCTCAAGGACAGTGAGAAGAACAGGAAGCTCTTTGACCTCCTTGACGTCCTAGAGTTTAACCAGGTGGTGATCTTTGTCAAATCTGTGCAACGTTGCATGGCCCTGGCCCAGCTTCTAGTGGAACAGAACTTCCCAGCCATTGCTATTCACCGAGGCATGCCCCAGGAGGAGCGCTTGTCCCGCTACCAGCAGTTCAAGGACTTCCAGCGGCGCATCTTGGTGGCTACCAATCTGTTTGGCAGAGGTATGGACATTGAGCGAGTCAACATCGTCTTCAACTATGACATGCCAGAGGACTCGGATACCTACCTTCACCGAGTGGCGCGTGCTGGTCGCTTTGGTACCAAAGGCCTGGCAGTCACTTTTGTGTCTGATGAAAATGATGCCAAAATCCTCAATGATGTTCAGGACCGGTTTGAAGTTAACGTGGCAGAGCTTCCAGAAGAAATAGATATCTCCACATACATTGAACAGAGCCGATAACCA</Hsp_hseq>
+ <Hsp_midline>|||| | ||||| ||||||| |||| ||| | ||| |||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||| || || || |||||||| |||||||| || |||||||| |||| ||||| || || ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| || ||||| || |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| |||||||| ||||| |||| || ||||| | || |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| || || |||| ||||| | | ||| | ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| |||||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||| | ||||||||||| ||| | || || || ||||||||||||||| | ||||| ||||| || ||||| || |||||||||||||||||||| || ||||| ||||||||||| ||||| || || ||||| |||||| |||||||||||||| |||| ||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||| | || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||| || || ||||||||||| ||||||||||| || |||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| ||||| || |||||||||||||| || |||||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>40</Hit_num>
+ <Hit_id>gi|354479466|ref|XM_003501883.1|</Hit_id>
+ <Hit_def>PREDICTED: Cricetulus griseus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 (Ddx39), mRNA</Hit_def>
+ <Hit_accession>XM_003501883</Hit_accession>
+ <Hit_len>1654</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1649.57</Hsp_bit-score>
+ <Hsp_score>1828</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>20</Hsp_query-from>
+ <Hsp_query-to>1405</Hsp_query-to>
+ <Hsp_hit-from>69</Hsp_hit-from>
+ <Hsp_hit-to>1452</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1198</Hsp_identity>
+ <Hsp_positive>1198</Hsp_positive>
+ <Hsp_gaps>2</Hsp_gaps>
+ <Hsp_align-len>1386</Hsp_align-len>
+ <Hsp_qseq>AGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCA</Hsp_qseq>
+ <Hsp_hseq>AGACAGGAAGCGTTGCCGCTCGCGTCCAGGGGCGCGACGTACAACC--AGACGGACGGCTCTCCTCGCAGCTCGCGGAGGCGAACCGGGCGACAGTGCCATGGCAGAACAAGATGTGGAAAATGAGCTTTTGGATTATGATGAAGACGAAGAGCCCCAAGCACCCCAGGAGAGCACTCCAGCTCCCCCGAAGAAAGATGTCAAAGGGTCTTACGTCTCCATTCACAGTTCTGGTTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGAGAGCCATAGTTGACTGTGGCTTTGAGCATCCTTCAGAGGTCCAGCATGAGTGTATTCCCCAGGCCATTCTGGGTATGGATGTCCTGTGCCAGGCCAAGTCTGGGATGGGCAAGACAGCTGTGTTTGTGCTGGCCACCCTGCAGCAGATCGAGCCCATCAATGGCCAGGTATCTGTACTGGTCATGTGCCATACAAGGGAGCTGGCCTTCCAGATAAGCAAGGAATATGAGCGCTTCTCTAAGTACATGCCCAGTGTCAAGGTATCAGTGTTCTTTGGGGGCCTCTCCATTAAGAAGGATGAAGATGTGTTGAAGAAGAACTGTCCCCATGTTGTGGTGGGGACACCAGGCCGGATCCTGGCACTTGTACGGAGCAGGAGTCTGAACCTGAGGAATGTGAAACACTTTGTACTAGATGAATGTGACAAGATGCTGGAACAGCTGGACATGCGCCGGGACGTGCAAGAGATCTTTCGCCTGACACCCCATGAGAAGCAGTGCATGATGTTCAGTGCTACCTTGAGCAAGGAGATCCGGCCGGTCTGCAGGAAGTTCATGCAGGATCCCATGGAAGTGTTTGTGGATGACGAGACCAAGCTCACACTGCACGGGCTACAGCAGTACTACGTCAAGCTCAAGGACAGTGAGAAGAACCGGAAGCTCTTTGACCTCCTTGACGTCCTAGAGTTTAACCAGGTGGTGATCTTCGTCAAGTCTGTGCAACGTTGCATGGCCCTGGCCCAGCTCCTAGTGGAACAGAACTTCCCAGCCATTGCTATTCATCGAGGCATGCCCCAGGAGGAGCGCCTGTCTCGCTACCAGCAGTTCAAGGACTTCCAGCGGCGCATCCTGGTGGCTACCAATTTGTTTGGCAGAGGTATGGACATTGAGCGAGTCAACATCGTCTTCAACTATGACATGCCAGAGGACTCCGATACTTACCTTCACCGAGTGGCTCGTGCTGGTCGCTTTGGTACCAAAGGCCTGGCAGTCACTTTTGTATCTGATGAAAATGATGCCAAAATCCTCAATGATGTTCAGGATCGGTTTGAAGTTAATGTGGCAGAGCTTCCAGAAGAAATAGATATCTCCACATACATTGAACAGAGCCGATAACCA</Hsp_hseq>
+ <Hsp_midline>|| ||||||||| || |||| ||| | || || || | |||| || ||| | |||| | ||||| ||||||| |||| ||| | ||| |||||||||||| ||||||||||| || ||||||||||| |||||||| ||||||||||| || || || |||||||| ||||||||||| |||||||| |||| || || ||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| |||||||| ||||| |||| || ||||| | || |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| || |||||||| || || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| || || |||| ||||| | | ||| | ||||||||| |||||||| || || || ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||||||||||||||||||||| || ||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||| | || || || ||||||||||||||| | |||||||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||| || || || || |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||||||| | || |||||||| |||||||||||||||||||| ||||| |||||||| |||||||| || || ||||| ||||| ||||| || || ||||||||||| ||||||||||| || |||||||||| ||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>41</Hit_num>
+ <Hit_id>gi|55926218|ref|NM_053563.2|</Hit_id>
+ <Hit_def>Rattus norvegicus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), mRNA</Hit_def>
+ <Hit_accession>NM_053563</Hit_accession>
+ <Hit_len>1740</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1647.76</Hsp_bit-score>
+ <Hsp_score>1826</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>118</Hsp_query-from>
+ <Hsp_query-to>1405</Hsp_query-to>
+ <Hsp_hit-from>303</Hsp_hit-from>
+ <Hsp_hit-to>1590</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1138</Hsp_identity>
+ <Hsp_positive>1138</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1288</Hsp_align-len>
+ <Hsp_qseq>CATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCA</Hsp_qseq>
+ <Hsp_hseq>CATGGCAGAACAGGATGTGGAAAATGAGCTTTTGGATTATGATGAAGATGAAGAGCCCCAGGTACCCCAGGAGAGCACTCCAGCTCCCCCGAAGAAAGATGTCAAAGGATCTTATGTCTCCATCCACAGTTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGAGAGCTATAGTTGACTGTGGCTTTGAACATCCTTCAGAGGTCCAGCATGAATGTATTCCCCAGGCCATTCTGGGTATGGATGTCCTGTGCCAAGCCAAGTCTGGGATGGGCAAGACAGCTGTGTTTGTGCTGGCCACCCTGCAGCAGATTGAACCCATCAATGGCCAGGTATCAGTACTGGTCATGTGCCACACAAGGGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCGAAGTACATGCCCAGTGTCAAGGTATCTGTGTTCTTTGGAGGCCTCTCCATTAAGAAAGATGAAGATGTGTTAAAGAAGAACTGTCCCCATGTTGTGGTGGGGACACCAGGCCGGATCCTGGCCCTCGTGCGGAGCAGGAGCCTCAACCTGAGGAATGTGAAGCACTTTGTGCTAGATGAATGTGACAAGATGCTGGAACAGCTGGACATGCGCCGGGATGTACAGGAGATCTTTCGTCTGACACCCCATGAGAAGCAATGTATGATGTTCAGCGCCACCCTGAGCAAGGAGATCCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCTATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACACTGCATGGGCTGCAGCAGTATTACGTCAAACTCAAGGACAGTGAGAAGAATCGTAAACTCTTCGACCTCCTTGACGTGCTAGAGTTTAACCAGGTGGTGATCTTTGTCAAGTCTGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTAGTGGAACAGAATTTTCCGGCTATCGCTATTCACAGAGGCATGGCCCAGGAGGAGCGCCTGTCCCGATACCAGCAGTTCAAGGACTTCCAGCGTCGCATCCTAGTGGCTACTAATCTGTTTGGCAGAGGCATGGACATTGAGAGAGTCAACATCGTCTTCAACTATGACATGCCAGAGGACTCGGATACCTACCTGCACCGAGTGGCTCGTGCTGGTCGCTTTGGTACCAAGGGTCTGGCAGTCACTTTTGTGTCAGATGAGAATGATGCCAAAATCCTTAATGACGTTCAGGACCGGTTTGAAGTGAATGTGGCTGAGCTTCCAGAAGAAATAGATATCTCCACATACATTGAGCAGAGCCGGTAACCA</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||| || || |||||||| ||||||||||| |||||||| |||| ||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||| | || || || |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| ||||||||||| || |||| || ||||| | || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||| || || |||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||| |||||| ||| ||| | ||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||||||||| || || ||||| || ||| | || ||||| ||||||||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||| ||||| || ||| | |||||||||||||||||||||||||| || || |||||||||||||| |||||||| || ||||| ||||| || |||||||||||| | || |||||||| ||| |||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||| || || ||||||||||| ||||| || || || ||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| || |||||||| ||||| || |||||||||||||| ||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>42</Hit_num>
+ <Hit_id>gi|504172084|ref|XM_004595565.1|</Hit_id>
+ <Hit_def>PREDICTED: Ochotona princeps DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), transcript variant X1, mRNA</Hit_def>
+ <Hit_accession>XM_004595565</Hit_accession>
+ <Hit_len>1292</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1617.1</Hsp_bit-score>
+ <Hsp_score>1792</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>119</Hsp_query-from>
+ <Hsp_query-to>1403</Hsp_query-to>
+ <Hsp_hit-from>11</Hsp_hit-from>
+ <Hsp_hit-to>1292</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1130</Hsp_identity>
+ <Hsp_positive>1130</Hsp_positive>
+ <Hsp_gaps>3</Hsp_gaps>
+ <Hsp_align-len>1285</Hsp_align-len>
+ <Hsp_qseq>ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAAC</Hsp_qseq>
+ <Hsp_hseq>ATGACCGAGCAGGACGTGGAGAATGAGCTGCTGGACTACGAGGAGGACGAGGAGCCACAGGCGCCCACCGAGAGCACCCCAGCGCCCCCCACG---GACGTCAAGGGCTCCTACGTGTCTATCCACAGCTCGGGCTTCCGGGACTTCCTGCTGAAGCCGGAGCTGCTGCGTGCCATTGTGGACTGCGGCTTCGAGCACCCCTCGGAAGTCCAGCATGAGTGCATTCCGCAGGCCGTCCTGGGCATGGACGTCCTGTGTCAGGCCAAGTCTGGGATGGGCAAGACGGCGGTCTTTGTGCTGGCCACGCTGCAGCAGATCGAGCCGGTCAATGGACAGGTCACGGTCCTGGTCATGTGCCACACGCGGGAGCTGGCCTTCCAGATCAGCAAGGAATACGAGCGCTTCTCCAAGTACATGCCCAGTGTGAAGGTGTCCGTGTTCTTCGGGGGCCTGTCCATCAAGAAGGACGAGGAGGTGCTGAAGAGGAACTGCCCGCACGTGGTGGTGGGGACGCCGGGCCGCATCCTGGCCCTGGTGCGCAGTCGCAGCCTCAACCTGCGCAACGTGAAGCACTTCGTGCTGGACGAGTGTGACAAGATGCTGGAACAACTAGACATGCGGCGGGACGTGCAGGAGGTCTTCCGGCTCACGCCGCACGAGAAGCAATGCATGATGTTCAGCGCCACCCTGAGGAAGGAGATCCGGCCCGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGATGAGACGAAGCTCACGCTGCACGGGCTGCAGCAGTATTACGTCAAGCTCAAAGACAGTGAGAAAAACCGGAAGCTCTTCGACCTGTTGGACGTGTTGGAGTTCAACCAGGTGGTGATCTTCGTCAAGTCGGTGCAGCGCTGCATGGCGCTGGCCCAGCTCCTTGTGGAGCAGAACTTCCCAGCCATCGCCATCCACCGGGGCATGGCCCAGGAAGAGCGCCTGTCACGCTACCAACAGTTCAAGGACTTCCAGCGGCGCATCCTGGTGGCCACCAACCTGTTCGGCCGAGGCATGGACATCGAGCGCGTCAACATCGTCTTCAACTACGACATGCCCGAGGACTCGGACACCTACCTCCACCGGGTGGCCCGCGCAGGCCGCTTCGGCACCAAAGGCCTGGCCGTCACGTTCGTGTCGGACGAGAACGACGCCAAGATCCTCAATGACGTCCAGGACCGCTTTGAGGTGAACGTGGCCGAGCTGCCCGGGGAGATCGACATCTCCACATACATTGAGCAGAGCCGGTAAC</Hsp_hseq>
+ <Hsp_midline>||| | || ||||| ||||| || || || |||| ||||| || || || ||||| ||||| || |||||||| ||||| ||||| | | ||| ||||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| || || || |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||||||||| || || |||||||||||||| || || ||| |||||| |||||| || || || ||||||||||| ||||||||||||||||| || ||||| | | | ||| ||| ||| || ||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||| ||||||| || || || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||| || || ||||| ||| ||||||| ||||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||| |||||||||||||| ||| |||| || ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||| || || ||||| || || || | ||| |||||||||||||||||||| ||||||||||||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>43</Hit_num>
+ <Hit_id>gi|507662009|ref|XM_004635622.1|</Hit_id>
+ <Hit_def>PREDICTED: Octodon degus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (Ddx39a), mRNA</Hit_def>
+ <Hit_accession>XM_004635622</Hit_accession>
+ <Hit_len>1284</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1604.48</Hsp_bit-score>
+ <Hsp_score>1778</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>119</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1284</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1121</Hsp_identity>
+ <Hsp_positive>1121</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1284</Hsp_align-len>
+ <Hsp_qseq>ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>ATGGCAGAACAAGATGTGGAAAATGAGCTTCTGGATTATGAGGAAGATGAAGAGCCCCAGGCTCCTGCTGAGAGCACTCCCACACTACCAAAGAAAGATGTGAAGGGCTCCTATGTCTCCATCCACAGCTCTGGCTTTCGGGACTTCCTGCTGAAACCAGAGCTCCTGAGGGCCATCGTGGACTGTGGCTTTGAGCATCCCTCAGAGGTTCAGCATGAGTGCATCCCCCAGGCCATCCTGGGCATGGATGTCCTGTGCCAGGCCAAGTCTGGAATGGGCAAGACGGCGGTCTTCGTGCTGGCCACCCTACAGCAAATTGAGCCTGTCAACGGCCAGGTGGCAGTTCTGGTCATGTGTCACACAAGGGAGCTGGCCTTCCAGATCAGCAAGGAATACGAGCGTTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTTGGAGGCCTCTCCATCAAGAAGGATGAGGAAGTACTGAAGAGAAACTGTCCACACGTCGTGGTAGGAACCCCAGGCCGGATCCTGGCACTTGTGAGAAACAGGACCCTCAACCTGAAGAACGTGAAGCACTTTGTGCTTGATGAATGTGACAAGATGCTGGAGCAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCCGCCTGACACCCCATGAGAAGCAGTGCATGATGTTCAGCGCCACTCTGAGCAAGGAGATCCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTAGACGATGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTGAAGCTCAAGGACAGTGAGAAGAACCGCAAGCTGTTTGACCTCCTGGATGTATTAGAATTTAACCAGGTGGTGATCTTCGTGAAGTCCGTGCAGCGTTGCATGGCCCTGGCCCAGCTCCTGGTGGAGCAGAACTTCCCCGCCATCGCCATTCACCGTGGCATGGCACAGGAGGAGCGCCTATCACGATACCAGCAGTTCAAGGACTTCCAGCGGCGGATCCTGGTGGCCACTAATCTGTTTGGACGAGGGATGGACATTGAACGTGTCAACATCGTCTTCAACTACGATATGCCCGAAGACTCAGACACTTACCTGCACCGGGTTGCCCGTGCAGGTCGCTTTGGTACCAAAGGCCTGGCCATCACTTTCGTGTCTGATGAGAATGACGCCAAAATTCTTAATGATGTTCAAGACCGGTTTGAAGTTAATGTGGCTGAGCTTCCAGAAGAGATCGACATCTCCACATACATTGAACAGAGTCGGTAA</Hsp_hseq>
+ <Hsp_midline>||||||||||| ||||||||||| || ||| ||||||| || ||||| |||||||||||||||||| |||||||| || | | || |||||||| | ||||| ||||| || |||||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | || ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| |||||| |||||||| || |||||||| || ||||| ||||| |||||||| || ||| | || |||| | ||| ||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||| ||||||| | || |||||||||||| | |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||| || || |||||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| |||||||| || ||||| || || ||||||||||||||||||||||| || |||||||| || |||||||||||||||||||| || ||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>44</Hit_num>
+ <Hit_id>gi|403302192|ref|XM_003941698.1|</Hit_id>
+ <Hit_def>PREDICTED: Saimiri boliviensis boliviensis DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A, transcript variant 2 (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003941698</Hit_accession>
+ <Hit_len>1429</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1471.03</Hsp_bit-score>
+ <Hsp_score>1630</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>7</Hsp_query-from>
+ <Hsp_query-to>982</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>973</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>912</Hsp_identity>
+ <Hsp_positive>912</Hsp_positive>
+ <Hsp_gaps>3</Hsp_gaps>
+ <Hsp_align-len>976</Hsp_align-len>
+ <Hsp_qseq>AGCCCGACGCAAGAGGCAGGAAGCGCAGCAACTCGTGTCTGAGCGCCCGGCGGAAAACCGAAGTTGGAAGTGTCTCTTAGCAGCGCGCGGAGAAGAACGGGGAGCCAGCATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAG</Hsp_qseq>
+ <Hsp_hseq>AGCCAGACGCAGGAGGCAGGAAGCGCGGCAGCTCGTGCCTGAGCTCCCGGCAGATAACCGAAGTCGGAAGGCTCTCCTAGCAGCACGCG---AAGAACTGCGAGCCAGCAGCATGGCAGAACAGGATGTGGAAAACGAGCTTTTGGATTACGACGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCGCTAAAAAAGACATGAAGGGATCCTATGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCAGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCTGAGGTTCAGCACGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCGAAGTCTGGGATGGGCAAGACCGCAGTCTTCGTGCTAGCCACCCTGCAACAGATCGAGCCCGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTCTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGGGGCCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTTGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTTGTGCGGAACAGAAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGCGACAAAATGCTGGAGCAGCTCGACATGCGGCGGGACGTGCAGGAGATCTTCCGCCTGACGCCGCATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAAGTGTTTGTGGATGATGAGACCAAGCTCACGCTACACGGACTGCAGCAGCACTACGTCAAACTCAGAGACAGCGAGAAGAACCGGAAGCTCTTCGACCTCCTGGATGTGCTGGAGTTTAACCAG</Hsp_hseq>
+ <Hsp_midline>|||| |||||| |||||||||||||| ||| |||||| |||||| |||||| || ||||||||| ||||| |||| ||||||| |||| |||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||| ||||||||||| |||||||| || ||| |||||||||||||||||||||||</Hsp_midline>
+ </Hsp>
+ <Hsp>
+ <Hsp_num>2</Hsp_num>
+ <Hsp_bit-score>670.336</Hsp_bit-score>
+ <Hsp_score>742</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>1092</Hsp_query-from>
+ <Hsp_query-to>1539</Hsp_query-to>
+ <Hsp_hit-from>973</Hsp_hit-from>
+ <Hsp_hit-to>1429</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>423</Hsp_identity>
+ <Hsp_positive>423</Hsp_positive>
+ <Hsp_gaps>11</Hsp_gaps>
+ <Hsp_align-len>458</Hsp_align-len>
+ <Hsp_qseq>GCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCACCACGTG----------CCAGAGCCGCCCACCCGGAGCCGCCCGCATGCAGCTTCACCTCCCCTTTCCAGGCGCCACTGTTGAGAAGCTAGAGATTGTATGAGAATAAACTTGTTATTATGGAAGCCTGGCTCCCACCCCATCT</Hsp_qseq>
+ <Hsp_hseq>GCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGAGGGATGGACATTGAGCGAGTCAACATTGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAACCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAGCTTCCAGAGGAAATTGACATCTCCACATACATTGAGCAGAGCCGGTAACCCCCACGTGCCCTGCCAGTCCAGAGCCGCCAACCTGGAGCCTCCCGCACGCAGCTCCACCACCTCTTTCCAGACGCCCCTGTTCAGAAGCTGTAGATTGTATAAGAATAAACGTG-TATTATGGAAGCCTGGTTCCCACACCATCT</Hsp_hseq>
+ <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| |||||| |||||| |||||| |||| || |||||||| |||| ||||| ||||||| ||||||||| ||||||||| || |||||||||||||||| |||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>45</Hit_num>
+ <Hit_id>gi|395512965|ref|XM_003760655.1|</Hit_id>
+ <Hit_def>PREDICTED: Sarcophilus harrisii DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A (DDX39A), mRNA</Hit_def>
+ <Hit_accession>XM_003760655</Hit_accession>
+ <Hit_len>1618</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1352.01</Hsp_bit-score>
+ <Hsp_score>1498</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>119</Hsp_query-from>
+ <Hsp_query-to>1405</Hsp_query-to>
+ <Hsp_hit-from>186</Hsp_hit-from>
+ <Hsp_hit-to>1472</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1074</Hsp_identity>
+ <Hsp_positive>1074</Hsp_positive>
+ <Hsp_gaps>2</Hsp_gaps>
+ <Hsp_align-len>1288</Hsp_align-len>
+ <Hsp_qseq>ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCA-AGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAACCA</Hsp_qseq>
+ <Hsp_hseq>ATGGCTGAACAAGACGTAGAAAATGAACTGCTTGATTATGAAGAGGATGAGGAGCCCCAGCC-CATGACAGAGAGCACGCCCACCCCTGCTAAGAAAGACGTGAAGGGCTCCTATGTCTCCATTCATAGCTCAGGCTTTAGGGATTTCCTTCTGAAGCCAGAGCTCCTGAGGGCTATTGTGGACTGTGGCTTTGAGCATCCATCTGAAGTCCAGCATGAATGTATTCCCCAAGCCATATTGGGAATGGATGTCCTGTGCCAAGCCAAGTCTGGAATGGGCAAGACTGCAGTCTTTGTGTTGGCTACCCTGCAGCAGATCGAGCCTGTGGATGGACAGGTAACCGTTCTTGTCATGTGCCACACTCGGGAGTTGGCCTTCCAGATCAGTAAGGAGTATGAGCGCTTCTCCAAATATATGCCCAGTGTCAAGGTCTCTGTGTTCTTTGGTGGCCTCTCGATCAAGAAGGATGAAGATGTTCTGAAGAAGAACTGCCCTCATGTAGTTGTGGGGACGCCCGGCCGGATTCTGGCCTTAGTACGCAACAAGAGTCTCAATCTGAAAAATGTGAAGCACTTTGTACTCGATGAGTGTGACAAGATGCTGGAACAGCTTGACATGCGCCGGGACGTTCAGGAGATCTTCCGCTTGACACCCCACGAGAAGCAGTGCATGATGTTCAGTGCCACGCTGAGTAAGGAGATAAGACCCGTCTGCAGAAAGTTCATGCAGGATCCAATGGAAGTTTTTGTGGACGATGAGACAAAATTGACACTGCACGGACTACAGCAGTACTATGTGAAGCTTAAGGACAGCGAGAAAAACAGAAAACTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGGTGATCTTTGTGAAGTCAGTGCAGCGCTGTGTAGCGTTGGCGCAGCTCCTAGTAGAACAGAACTTCCCAGCCATTGCCATCCATAGAGGAATGGCTCAGGAGGAGAGATTATCACGATATCAACAGTTCAAGGATTTTCAGCGGCGGATCCTGGTGGCCACCAATCTCTTTGGCCGAGGCATGGATATTGAGCGGGTCAATATAGTCTTCAATTATGACATGCCCGAGGACTCCGATACCTACCTGCACCGGGTGGCCAGGGCTGGCCGGTTCGGTACCAAGGGCTTGGCCATCACTTTCGTCTCTGACGAGGGGGATGCTAAGATCCTTAATGATGTCCAGGACCGGTTTGAAGTGAATGTGGCAGAGCTGCCCGAGGAAATCGACATCTCCACATACATTGAACAAAGTCGATAACCA</Hsp_hseq>
+ <Hsp_midline>||||| ||||| || || ||||| || || | ||||| || || || || ||||||||| | | | | ||||||||| || | || ||||||||||| | ||||| ||||| || ||||| || ||||| ||||| |||| || || |||||||| ||||||||| |||| || ||||||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||| |||| ||||| ||||||||||| |||||||| || ||||||||||| || ||||| ||| |||| ||||| |||||||| |||||||| | |||||||| || || || |||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||| || ||||| || |||||||| || ||||| || ||||| | || || || | ||| ||| || || ||||||||||||||||| || || |||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || | || || ||||| ||||||||||||||||| ||||| || ||||||||||| ||||| || | || |||||||| || ||||||||||| || || || || ||||| ||||| ||| | || ||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||| | || |||| |||||||| || || ||||||||||| ||||| |||||||| | || ||||| ||||||||| | | ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| || ||||| ||||| || ||||| || || |||||||| |||||||| || ||||||||||||||||||||| |||| || || || || ||||| ||| | ||||||||||| || ||||||||| ||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||| || || || || ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>46</Hit_num>
+ <Hit_id>gi|126323153|ref|XM_001366341.1|</Hit_id>
+ <Hit_def>PREDICTED: Monodelphis domestica ATP-dependent RNA helicase DDX39A-like (LOC100020548), mRNA</Hit_def>
+ <Hit_accession>XM_001366341</Hit_accession>
+ <Hit_len>1284</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1352.01</Hsp_bit-score>
+ <Hsp_score>1498</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>119</Hsp_query-from>
+ <Hsp_query-to>1402</Hsp_query-to>
+ <Hsp_hit-from>1</Hsp_hit-from>
+ <Hsp_hit-to>1284</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1070</Hsp_identity>
+ <Hsp_positive>1070</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1284</Hsp_align-len>
+ <Hsp_qseq>ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTAA</Hsp_qseq>
+ <Hsp_hseq>ATGGCTGAACAAGATGTAGAAAATGAATTGCTTGACTATGAAGAAGATGAGGAGCCCCAACCTCTGACAGAGAGCACACCTACCCCTGCTAAGAAGGATGTCAAGGGTTCCTATGTCTCCATTCATAGCTCTGGCTTCAGAGATTTTCTTCTGAAACCTGAGCTCTTGAGGGCTATTGTGGATTGTGGCTTTGAGCATCCATCTGAAGTCCAGCATGAGTGTATTCCTCAAGCCATCTTGGGAATGGATGTCCTTTGCCAGGCCAAGTCTGGAATGGGCAAGACAGCAGTCTTTGTGTTGGCTACACTACAGCAGATAGAGCCTGTGGATGGACAGGTGACAGTCCTTGTCATGTGCCATACTCGGGAATTGGCCTTCCAAATCAGTAAGGAATATGAGCGCTTCTCCAAGTACATGCCCAATGTCAAGGTTTCTGTGTTCTTTGGTGGCCTTTCGATCAAGAAGGATGAAGATGTTCTAAAGAAAAATTGTCCCCATGTAGTGGTGGGGACACCTGGCCGGATTCTGGCCTTAGTACGCAACAAGAGCCTCAATTTGAAAAATGTGAAGCACTTTGTACTGGATGAGTGTGACAAGATGCTGGAGCAGCTTGACATGCGCCGGGATGTGCAGGAAATCTTCCGCTTGACACCCCATGAGAAGCAGTGCATGATGTTCAGTGCCACCCTGAGTAAGGAGATAAGGCCTGTCTGCAGGAAGTTCATGCAGGATCCAATGGAAGTTTTTGTGGATGATGAGACAAAATTGACACTGCACGGGCTCCAGCAATACTACGTGAAGCTTAAGGACAGCGAGAAAAACAGAAAACTTTTTGATCTCTTGGATGTGCTAGAGTTTAACCAGGTTGTGATATTTGTGAAGTCAGTGCAGCGTTGTGTAGCCTTGGCGCAGCTCCTTGTGGAACAGAATTTCCCAGCCATTGCCATTCATAGAGGCATGGCCCAGGAGGAAAGGCTGTCACGGTACCAACAGTTCAAAGATTTCCAGCGACGGATCCTAGTGGCCACCAATCTGTTTGGTCGGGGAATGGATATTGAGCGGGTCAACATAGTCTTCAATTATGACATGCCCGAGGACTCTGATACCTACCTGCACCGGGTTGCCAGGGCTGGCCGATTTGGAACCAAGGGTTTGGCCATCACCTTTGTCTCTGATGAGGGAGATGCCAAGATCCTTAATGATGTCCAGGACCGGTTTGAAGTGAATGTGGCAGAACTGCCTGAGGAAATTGACATCTCCACATATATTGAAAAAAGCCGATAA</Hsp_hseq>
+ <Hsp_midline>||||| ||||| ||||| ||||| || | | || || || ||||| || |||||||| ||| |||||||||||| | || ||||||| || ||||||| ||||| || ||||| || |||||||||||| | || ||||| ||||| || |||||| || |||| || ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || |||||| |||| ||||| ||||| |||||||||||||| || |||||||||||||| ||||| ||| |||| || ||||||||||| |||||||| | ||||||||||| ||||| ||||||||||| || |||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||||||||| || | ||||| || ||||||||||| ||||||||||| || ||||| || ||||| | || || || | |||| ||| | || ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||| ||||| || |||||||| || ||||| || | || |||||||| || ||||| |||||||| || || || ||||| ||||| ||| | || || |||||||||||||||||||| |||||||||||||| | || || || |||||||||||||| || | ||| |||| |||||||| ||||| ||||| ||||| ||||| ||||| || | ||||||||||||||||| | |||||||| || || |||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| || ||||| |||||||| ||||| || || |||||||| |||||||| || ||||||||||||||||| ||| |||| || || ||||| ||||| || | |||||||| ||||| ||||| ||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||| || || | ||||| |||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>47</Hit_num>
+ <Hit_id>gi|213514235|ref|NM_001139608.1|</Hit_id>
+ <Hit_def>Salmo salar DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b (ddx39b), mRNA</Hit_def>
+ <Hit_accession>NM_001139608</Hit_accession>
+ <Hit_len>1528</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1278.07</Hsp_bit-score>
+ <Hsp_score>1416</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>119</Hsp_query-from>
+ <Hsp_query-to>1393</Hsp_query-to>
+ <Hsp_hit-from>39</Hsp_hit-from>
+ <Hsp_hit-to>1313</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1052</Hsp_identity>
+ <Hsp_positive>1052</Hsp_positive>
+ <Hsp_gaps>6</Hsp_gaps>
+ <Hsp_align-len>1278</Hsp_align-len>
+ <Hsp_qseq>ATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAGAGCCCCAGGCTCCTCAAGAGA--GCA-CACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAG</Hsp_qseq>
+ <Hsp_hseq>ATGGCTGAGAATGACGTTGACAATGAGCTGCTGGACTATGAAGAGGACGAGGAGCCTCAGGGAGCCCCAGAGACTGCTGCCCCAGCAGGC---AAGAAGGAGGTGAAGGGCTCCTATGTCTCCATCCACAGCTCTGGCTTCAGAGACTTCCTGCTCAAACCAGAGCTGCTCCGCGCTATTGTCGACTGTGGCTTTGAGCATCCGTCTGAAGTTCAACATGAGTGCATCCCTCAGGCCATCTTGGGCATGGACATCCTGTGCCAGGCCAAGTCTGGTATGGGCAAAACGGCAGTGTTTGTTCTTGCCACACTACAGCAGATCGAGCCTGTGGATGGACAGGTGTCAGTTCTAGTAATGTGTCACACACGAGAGCTGGCCTTCCAGATCAGCAAAGAGTACGAGCGCTTCTCCAAGTACATGCCCACAGTCAAGGCAGCCGTGTTCTTCGGGGGCCTGTCTATCAAGAAGGATGAGGATGTGCTGAAGAAGAACTGCCCTCACATTGTGGTGGGAACCCCTGGCCGAATCCTGGCCCTCATCCGCAACAAGACCCTCAACCTAAAGAACGTCAAGCACTTTGTCCTGGATGAGTGTGACAAGATGCTGGAGCAGTTGGACATGAGGCGTGACGTACAGGACATCTTCAGGCTAACACCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTCAGCAAGGAGATTCGACCGGTCTGCCGCAAGTTCATGCAGGATCCCATGGAGGTGTTTGTAGATGATGAGACCAAGCTGACGCTGCACGGTCTGCAGCAGTACTACTGCAAGCTGAAGGACAGCGAGAAGAACCGCAAGCTCTTTGACCTGCTTGATGTGCTGGAGTTCAACCAGGTGGTGATCTTTGTCAAGTCAGTGCAGCGCTGTGTGGCGCTCTCTCAGCTACTGGTGGAACAAAACTTCCCTGCCATTGCCATCCACAGGGGCATGGCTCAGGAGGAGAGGCTGTCCCGGTACCAGCAGTTCAAGGACTTCCAAAGGCGGATCTTGGTGGCCACCAACCTGTTTGGCCGAGGGATGGATATCGAGCGGGTCAATATTGTCTTCAATTACGACATGCCTGAGGACTCGGACACCTACTTACACAGGGTGGCCCGTGCTGGGAGGTTTGGAACCAAGGGTCTGGCTGTGACCTTTGTGTCAGACGAGACCGATGCCAAGACTTTGAATGATGTGCAGGACCGCTTTGAGGTCAATGTGGCCGAGCTGCCAGAAGAGATCGACATCTCCACTTACATTGAGCAG</Hsp_hseq>
+ <Hsp_midline>||||| || | || || || || || || |||| || || || || || ||||| |||| | | ||||| || | ||||| | ||||| || | ||||| ||||| || ||||||||||||||||||||| | ||||| ||||| || || ||||| || || || || || |||||||||||||||||||| ||||| || || ||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| || |||||||| || || || || || || ||||| ||||||||||| |||||||| | ||||||||| | || || || ||||| ||||| | ||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||| | ||||||||||| || || || |||||||||||||| || ||| ||||||||||||| || || | |||||||| ||||| ||||| |||||||| ||| | || || | || | ||| ||||||||| || ||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||| || || ||||| |||||| | || |||||||| |||||||||||||||||||||||||||||||| |||||||| || || || || ||| | |||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| || | |||||||||||||| ||||||||| | ||||| |||||||||||||||||||| |||| || | ||||| || ||||| || |||||||| ||||| ||||||||| |||||||||| ||||||||| | ||||| || || |||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||| |||||||| |||||||| ||||| || ||||| || |||||||||||||||||||||||||||||| | ||| |||||||||| || || | ||||| ||||| || || || | || |||||||| ||||||| |||||||| | | ||||| || |||||||| ||||| || |||||||| || || ||||| || |||||||||||||| ||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>48</Hit_num>
+ <Hit_id>gi|213511505|ref|NM_001141379.1|</Hit_id>
+ <Hit_def>Salmo salar ATP-dependent RNA helicase DDX39 (ddx39), mRNA</Hit_def>
+ <Hit_accession>NM_001141379</Hit_accession>
+ <Hit_len>1538</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1276.27</Hsp_bit-score>
+ <Hsp_score>1414</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>209</Hsp_query-from>
+ <Hsp_query-to>1393</Hsp_query-to>
+ <Hsp_hit-from>151</Hsp_hit-from>
+ <Hsp_hit-to>1335</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>994</Hsp_identity>
+ <Hsp_positive>994</Hsp_positive>
+ <Hsp_gaps>0</Hsp_gaps>
+ <Hsp_align-len>1185</Hsp_align-len>
+ <Hsp_qseq>AAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAG</Hsp_qseq>
+ <Hsp_hseq>AAGAAGGAGGTGAAGGGCTCCTATGTCTCCATCCACAGCTCTGGCTTCAGAGACTTCCTGCTCAAACCAGAGCTGCTCCGCGCGATTGTCGACTGTGGCTTTGAGCATCCGTCTGAAGTTCAACATGAGTGCATCCCTCAGGCCATCCTGGGCATGGACATCCTGTGCCAGGCTAAGTCTGGTATGGGCAAGACGGCAGTGTTTGTTCTTGCCACACTACAGCAGATCGAGCCTGTGGATGGACAGGTGTCAGTTCTAGTAATGTGCCACACACGAGAGCTGGCCTTCCAGATCAGCAAAGAGTACGAGCGCTTCTCCAAGTACATGCCCACAGTCAAGGCAGCCGTGTTCTTTGGGGGCCTGTCTATCAAGAAGGACGAAGATGTGCTGAAGAAGAACTGCCCTCACATTGTGGTGGGAACCCCTGGCCGAATCCTGGCCCTCATCCGCAACAAGACCCTCAACCTAAAGAACGTCAAGCACTTTGTCCTGGATGAGTGTGACAAGATGCTGGAGCAGTTGGACATGAGGCGTGACGTACAGGACATCTTCAGGCTAACACCACATGAGAAGCAGTGCATGATGTTCAGCGCCACCCTCAGCAAGGAGATTCGACCGGTCTGCCGCAAGTTCATGCAGGATCCCATGGAGGTGTTTGTAGATGATGAGACCAAGCTGACGCTGCACGGTCTGCAGCAGTACTACTGCAAGCTGAAGGACAGCGAGAAGAACCGCAAGCTCTTTGACCTGCTTGATGTGCTGGAGTTCAACCAGGTGGTGATCTTTGTCAAGTCAGTGCAGCGCTGTGTGGCGCTTTCTCAGCTACTGGTGGAACAGAACTTCCCTGCCATTGCCATCCACAGGGGCATGGCTCAGGAGGAGAGGCTGTCCCGGTACCAGCAGTTCAAGGACTTCCAAAGGCGGATCTTGGTGGCCACTAACCTGTTTGGCCGAGGGATGGATATCGAGCGGGTCAATATTGTCTTCAATTACGACATGCCTGAGGACTCAGACACATACTTACACAGGGTGGCCCGTGCTGGTCGGTTTGGAACCAAGGGTCTGGCTGTGACCTTTGTGTCAGACGAGACAGATGCCAAGACTTTGAATGACGTGCAGGACCGCTTTGAGGTCAATGTGGCCGAGCTGCCAGAAGAGATCGACATTTCCACTTACATTGAGCAG</Hsp_hseq>
+ <Hsp_midline>||||| || | ||||| ||||| || ||||||||||||||||||||| | ||||| ||||| || || ||||| || || || || || |||||||||||||||||||| ||||| || || ||||||||||| || ||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||| || || || || || ||||| ||||||||||| |||||||| | ||||||||| | || || || ||||||||||| | ||||||||||||||||||||||| || || |||||||| |||||||||||||||| ||||||| | |||||||| || || || || ||||||||||| ||||| ||| ||||||||||||| || || | |||||||| ||||| ||||| |||||||| ||| | || || | || | ||| ||||||||| || ||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||| || || ||||| |||||| | || |||||||| |||||||||||||||||||||||||||||||| |||||||| || || || || ||| | |||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| || | |||||||||||||| ||||||||| | ||||| |||||||||||||||||||| |||| || | ||||| || ||||| ||||||||||| ||||| ||||||||| |||||||||| ||||||||| | ||||| || || |||||||||||||| ||||| |||||||| |||||||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||| | ||| |||||||||| || ||||| ||||| ||||| || || || | || |||||||| ||||||| |||||||| | | |||||||| |||||||| ||||| || |||||||| || || ||||| || |||||||| ||||| ||||| ||||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>49</Hit_num>
+ <Hit_id>gi|524974020|ref|XM_005086794.1|</Hit_id>
+ <Hit_def>PREDICTED: Mesocricetus auratus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B (Ddx39b), transcript variant X2, mRNA</Hit_def>
+ <Hit_accession>XM_005086794</Hit_accession>
+ <Hit_len>1447</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1265.45</Hsp_bit-score>
+ <Hsp_score>1402</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>116</Hsp_query-from>
+ <Hsp_query-to>1401</Hsp_query-to>
+ <Hsp_hit-from>157</Hsp_hit-from>
+ <Hsp_hit-to>1445</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1056</Hsp_identity>
+ <Hsp_positive>1056</Hsp_positive>
+ <Hsp_gaps>11</Hsp_gaps>
+ <Hsp_align-len>1293</Hsp_align-len>
+ <Hsp_qseq>ATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAG-------AGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTA</Hsp_qseq>
+ <Hsp_hseq>ATCATGGCAGAGAACGATGTGGACAACGAGCTCCTGGACTACGAAGACGACGAAGTGGAGACAGCCGCAGGGGG----AGATGGGACCGAGGCTCCTGCCAAGAAAGACGTCAAGGGCTCCTATGTCTCCATCCACAGCTCGGGCTTTCGAGACTTCCTGCTCAAGCCAGAGTTGCTCCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCAGAGGTCCAGCATGAGTGCATCCCTCAGGCCATTCTGGGGATGGACGTCCTGTGCCAGGCCAAGTCGGGCATGGGGAAGACGGCCGTGTTTGTCCTGGCCACGCTGCAGCAGCTGGAGCCGATCACGGGGCAGGTGTCTGTGCTGGTGATGTGTCACACTAGGGAGCTGGCTTTTCAGATCAGCAAGGAATATGAGCGCTTCTCAAAGTACATGCCAAATGTCAAGGTGGCGGTGTTTTTTGGCGGTCTGTCCATCAAGAAGGACGAGGAGGTCCTGAAGAAGAACTGTCCGCACATCGTCGTGGGGACGCCTGGCCGGATTCTAGCCCTGGCTCGGAACAAGAGCCTGAACCTGAAGCACATCAAACACTTTATCTTGGACGAGTGTGACAAGATGCTTGAACAGCTCGACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCATGAGAAGCAGGTCATGATGTTCAGTGCTACCCTGAGCAAAGAGATCCGGCCAGTCTGCCGCAAGTTCATGCAAGATCCTATGGAGATCTTCGTGGACGATGAGACCAAGTTGACGCTGCACGGGTTGCAGCAATACTACGTGAAACTGAAGGACAACGAGAAGAACCGGAAGCTCTTTGACCTTCTCGATGTCCTCGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCTGTGCAGCGATGCATCGCCCTGGCCCAGCTTCTGGTGGAGCAGAACTTCCCAGCCATTGCTATCCACCGTGGCATGCCCCAGGAGGAGAGGCTCTCTCGGTATCAGCAGTTCAAGGATTTCCAGCGGCGGATTCTTGTGGCCACCAACCTGTTTGGCCGAGGCATGGACATTGAGCGTGTGAACATCGCCTTCAACTATGACATGCCAGAGGACTCGGACACCTACCTGCACCGGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCCATCACATTTGTATCTGATGAGAGCGATGCTAAGATCCTCAATGATGTGCAGGACCGCTTCGAGGTCAACATCAGCGAGCTCCCTGATGAGATCGACATCTCCTCCTACATTGAGCAGACACGGTA</Hsp_hseq>
+ <Hsp_midline>||||||||||| | |||||||| ||||| || |||| ||||| || || |||| |||| |||| ||| | || ||||| | ||||||||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| ||||| ||| | || |||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||| || || || || |||||||| || |||||| | ||||| ||| || |||||| | || ||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||| | ||||||||| | ||||| || || ||||| |||||||||||||| || || || |||||||||||||||| || |||| |||||||| || ||||| || || || || | ||||| | |||| | | ||| ||| | | || |||||| | |||||||||||||||||||||| || ||||| |||||||| |||||||| ||||| || || ||| |||| || || ||||||||| |||||||||||| || ||||||||||| || |||||||| || ||| | ||||||||||| ||||| |||||| | || |||||||| ||||||||| | ||||||||||| ||||||| |||||||| ||||| || |||| ||||||||||| ||||||||||| || | ||||| || ||||| ||||||||| | ||||| || ||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| || |||||||| |||||| ||||||||||| | || || || |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||| ||||| || ||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | || || || ||||||||||| ||| | |||||||| ||||| ||||| |||| ||||| || ||||||||||| || |||||||| || || || || | || || || || || |||||||||||| | ||||| ||||||| |||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+<Hit>
+ <Hit_num>50</Hit_num>
+ <Hit_id>gi|524974018|ref|XM_005086793.1|</Hit_id>
+ <Hit_def>PREDICTED: Mesocricetus auratus DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B (Ddx39b), transcript variant X1, mRNA</Hit_def>
+ <Hit_accession>XM_005086793</Hit_accession>
+ <Hit_len>1555</Hit_len>
+ <Hit_hsps>
+ <Hsp>
+ <Hsp_num>1</Hsp_num>
+ <Hsp_bit-score>1265.45</Hsp_bit-score>
+ <Hsp_score>1402</Hsp_score>
+ <Hsp_evalue>0</Hsp_evalue>
+ <Hsp_query-from>116</Hsp_query-from>
+ <Hsp_query-to>1401</Hsp_query-to>
+ <Hsp_hit-from>265</Hsp_hit-from>
+ <Hsp_hit-to>1553</Hsp_hit-to>
+ <Hsp_query-frame>1</Hsp_query-frame>
+ <Hsp_hit-frame>1</Hsp_hit-frame>
+ <Hsp_identity>1056</Hsp_identity>
+ <Hsp_positive>1056</Hsp_positive>
+ <Hsp_gaps>11</Hsp_gaps>
+ <Hsp_align-len>1293</Hsp_align-len>
+ <Hsp_qseq>ATCATGGCAGAACAGGATGTGGAAAACGATCTTTTGGATTACGATGAAGAGGAAG-------AGCCCCAGGCTCCTCAAGAGAGCACACCAGCTCCCCCTAAGAAAGACATCAAGGGATCCTACGTTTCCATCCACAGCTCTGGCTTCCGGGACTTTCTGCTGAAGCCGGAGCTCCTGCGGGCCATCGTGGACTGTGGCTTTGAGCATCCTTCTGAGGTCCAGCATGAGTGCATTCCCCAGGCCATCCTGGGCATGGACGTCCTGTGCCAGGCCAAGTCCGGGATGGGCAAGACAGCGGTCTTCGTGCTGGCCACCCTACAGCAGATTGAGCCTGTCAACGGACAGGTGACGGTCCTGGTCATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAATATGAGCGCTTTTCCAAGTACATGCCCAGCGTCAAGGTGTCTGTGTTCTTCGGTGGTCTCTCCATCAAGAAGGATGAAGAAGTGTTGAAGAAGAACTGTCCCCATGTCGTGGTGGGGACCCCGGGCCGCATCCTGGCGCTCGTGCGGAATAGGAGCTTCAGCCTAAAGAATGTGAAGCACTTTGTGCTGGACGAGTGTGACAAGATGCTGGAGCAGCTGGACATGCGGCGGGATGTGCAGGAGATCTTCCGCCTGACACCACACGAGAAGCAGTGCATGATGTTCAGCGCCACCCTGAGCAAGGACATCCGGCCTGTGTGCAGGAAGTTCATGCAGGATCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTCACGCTGCACGGCCTGCAGCAGTACTACGTCAAACTCAAAGACAGTGAGAAGAACCGCAAGCTCTTTGATCTCTTGGATGTGCTGGAGTTTAACCAGGTGATAATCTTCGTCAAGTCAGTGCAGCGCTGCATGGCCCTGGCCCAGCTCCTCGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGGGGCATGGCCCAGGAGGAGCGCCTGTCACGCTATCAGCAGTTCAAGGATTTCCAGCGGCGGATCCTGGTGGCCACCAATCTGTTTGGCCGGGGGATGGACATCGAGCGAGTCAACATCGTCTTTAACTACGACATGCCTGAGGACTCGGACACCTACCTGCACCGGGTGGCCCGGGCGGGTCGCTTTGGCACCAAAGGCCTAGCCATCACTTTTGTGTCTGACGAGAATGATGCCAAAATCCTCAATGACGTCCAGGACCGGTTTGAAGTTAATGTGGCAGAACTTCCAGAGGAAATCGACATCTCCACATACATCGAGCAGAGCCGGTA</Hsp_qseq>
+ <Hsp_hseq>ATCATGGCAGAGAACGATGTGGACAACGAGCTCCTGGACTACGAAGACGACGAAGTGGAGACAGCCGCAGGGGG----AGATGGGACCGAGGCTCCTGCCAAGAAAGACGTCAAGGGCTCCTATGTCTCCATCCACAGCTCGGGCTTTCGAGACTTCCTGCTCAAGCCAGAGTTGCTCCGGGCCATCGTGGACTGTGGCTTTGAGCATCCGTCAGAGGTCCAGCATGAGTGCATCCCTCAGGCCATTCTGGGGATGGACGTCCTGTGCCAGGCCAAGTCGGGCATGGGGAAGACGGCCGTGTTTGTCCTGGCCACGCTGCAGCAGCTGGAGCCGATCACGGGGCAGGTGTCTGTGCTGGTGATGTGTCACACTAGGGAGCTGGCTTTTCAGATCAGCAAGGAATATGAGCGCTTCTCAAAGTACATGCCAAATGTCAAGGTGGCGGTGTTTTTTGGCGGTCTGTCCATCAAGAAGGACGAGGAGGTCCTGAAGAAGAACTGTCCGCACATCGTCGTGGGGACGCCTGGCCGGATTCTAGCCCTGGCTCGGAACAAGAGCCTGAACCTGAAGCACATCAAACACTTTATCTTGGACGAGTGTGACAAGATGCTTGAACAGCTCGACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCATGAGAAGCAGGTCATGATGTTCAGTGCTACCCTGAGCAAAGAGATCCGGCCAGTCTGCCGCAAGTTCATGCAAGATCCTATGGAGATCTTCGTGGACGATGAGACCAAGTTGACGCTGCACGGGTTGCAGCAATACTACGTGAAACTGAAGGACAACGAGAAGAACCGGAAGCTCTTTGACCTTCTCGATGTCCTCGAGTTCAACCAGGTGGTGATCTTTGTGAAGTCTGTGCAGCGATGCATCGCCCTGGCCCAGCTTCTGGTGGAGCAGAACTTCCCAGCCATTGCTATCCACCGTGGCATGCCCCAGGAGGAGAGGCTCTCTCGGTATCAGCAGTTCAAGGATTTCCAGCGGCGGATTCTTGTGGCCACCAACCTGTTTGGCCGAGGCATGGACATTGAGCGTGTGAACATCGCCTTCAACTATGACATGCCAGAGGACTCGGACACCTACCTGCACCGGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCCATCACATTTGTATCTGATGAGAGCGATGCTAAGATCCTCAATGATGTGCAGGACCGCTTCGAGGTCAACATCAGCGAGCTCCCTGATGAGATCGACATCTCCTCCTACATTGAGCAGACACGGTA</Hsp_hseq>
+ <Hsp_midline>||||||||||| | |||||||| ||||| || |||| ||||| || || |||| |||| |||| ||| | || ||||| | ||||||||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| ||||| ||| | || |||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||| || || || || |||||||| || |||||| | ||||| ||| || |||||| | || ||||| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||| | ||||||||| | ||||| || || ||||| |||||||||||||| || || || |||||||||||||||| || |||| |||||||| || ||||| || || || || | ||||| | |||| | | ||| ||| | | || |||||| | |||||||||||||||||||||| || ||||| |||||||| |||||||| ||||| || || ||| |||| || || ||||||||| |||||||||||| || ||||||||||| || |||||||| || ||| | ||||||||||| ||||| |||||| | || |||||||| ||||||||| | ||||||||||| ||||||| |||||||| ||||| || |||| ||||||||||| ||||||||||| || | ||||| || ||||| ||||||||| | ||||| || ||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| || |||||||| |||||| ||||||||||| | || || || |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||| ||||| || ||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | || || || ||||||||||| ||| | |||||||| ||||| ||||| |||| ||||| || ||||||||||| || |||||||| || || || || | || || || || || |||||||||||| | ||||| ||||||| |||||</Hsp_midline>
+ </Hsp>
+ </Hit_hsps>
+</Hit>
+</Iteration_hits>
+ <Iteration_stat>
+ <Statistics>
+ <Statistics_db-num>4087430</Statistics_db-num>
+ <Statistics_db-len>7559748470</Statistics_db-len>
+ <Statistics_hsp-len>0</Statistics_hsp-len>
+ <Statistics_eff-space>0</Statistics_eff-space>
+ <Statistics_kappa>0.41</Statistics_kappa>
+ <Statistics_lambda>0.625</Statistics_lambda>
+ <Statistics_entropy>0.78</Statistics_entropy>
+ </Statistics>
+ </Iteration_stat>
+</Iteration>
+</BlastOutput_iterations>
+</BlastOutput>
+
diff --git a/data/parse.fastq b/data/parse.fastq
new file mode 100644
index 0000000000000000000000000000000000000000..8b941d317705f4e69c5bf50835330f725140f7f5
--- /dev/null
+++ b/data/parse.fastq
@@ -0,0 +1,8 @@
+@HWI-ST1019:196:D121WACXX:5:1101:1538:2300/1
+CCGCGACCTCTGTTCTGCAGCCCCTTCCCTTCCCCGCCTCCTGCTCTGCCGGGACTACGCACCGGCCTGATTGGTTACCCCCGGGGTGTCCTCGGTCACCA
++
+1+++4)<@<A<+2A9A2++:3C8:)1?BDBDBBDC@::6@(.8..7)777:<?@@##############################################
+@HWI-ST1019:196:D121WACXX:5:1101:1538:2300/2
+CCGCGACCTCTGTTCTGCAGCCCCTTCCCTTCCCCGCCTCCTGCTCTGCCGGGACTACGCACCGGCCTGATTGGTTACCCCCGGGGTGTCCTCGGTCACCA
++
+1+++4)<@<A<+2A9A2++:3C8:)1?BDBDBBDC@::6@(.8..7)777:<?@@##############################################
diff --git a/data/roche.sff b/data/roche.sff
new file mode 100644
index 0000000000000000000000000000000000000000..0af0cb0ab7d67cf676c9322145361bfc70aed99c
Binary files /dev/null and b/data/roche.sff differ
diff --git a/data/sanger.ab1 b/data/sanger.ab1
new file mode 100644
index 0000000000000000000000000000000000000000..6c2c6c43b9d48262633e00f9c5d8d410f7462dbe
Binary files /dev/null and b/data/sanger.ab1 differ
diff --git a/data/simple.fa b/data/simple.fa
new file mode 100644
index 0000000000000000000000000000000000000000..cf26118ed0333f38f47c71f142f915aff28b702e
--- /dev/null
+++ b/data/simple.fa
@@ -0,0 +1,4 @@
+>sp|P12464|RPOE_BACSU DNA-directed RNA polymerase subunit delta OS=Bacillus subtilis (strain 168) GN=rpoE PE=1 SV=1
+MGIKQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYT
+DLNIDGRFLALSDQTWGLRSWYPYDQLDEETQPTVKAKKKKAKKAVEEDLDLDEFEEIDE
+DDLDLDEVEEELDLEADDFDEEDLDEDDDDLEIEEDIIDEDDEDYDDEEEEIK
diff --git a/images/fastqc.png b/images/fastqc.png
new file mode 100644
index 0000000000000000000000000000000000000000..1a48da91069e4680aa9ac4ac19e84a32d51d63c5
Binary files /dev/null and b/images/fastqc.png differ
diff --git a/styles/notebook.css b/styles/notebook.css
index d51208ef99a6e47f928fb241730a3759a344c8ef..ebe1bc0193573097586d8b19a2c6da3b93efa157 100644
--- a/styles/notebook.css
+++ b/styles/notebook.css
@@ -31,14 +31,19 @@ div.text_cell_render{
.prompt{
display: None;
}
-.text_cell_render h5 {
+.text_cell_render .exercise {
font-weight: 300;
- font-size: 22pt;
+ /*font-size: 22pt;*/
color: #4057A1;
font-style: italic;
- margin-bottom: .5em;
+ /*margin-bottom: .5em;
margin-top: 0.5em;
- display: block;
+ display: block;*/
+}
+.text_cell_render .example {
+ font-weight: 300;
+ color: #40A157;
+ font-style: italic;
}
.warning{
diff --git a/styles/notebook.css.small b/styles/notebook.css.small
index 5d5ae4c72f0e1bfddce2e8cb22bf49ada70447f7..a869e63517b7d9f9c1e3938aa34d4da898c297e1 100644
--- a/styles/notebook.css.small
+++ b/styles/notebook.css.small
@@ -31,14 +31,19 @@ div.text_cell_render{
.prompt{
display: None;
}
-.text_cell_render h5 {
+.text_cell_render .exercise {
font-weight: 300;
- font-size: 22pt;
+ /*font-size: 22pt;*/
color: #4057A1;
font-style: italic;
- margin-bottom: .5em;
+ /*margin-bottom: .5em;
margin-top: 0.5em;
- display: block;
+ display: block;*/
+}
+.text_cell_render .example {
+ font-weight: 300;
+ color: #40A157;
+ font-style: italic;
}
.warning{